Results 81 - 100 of 334 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21392 | 3' | -55.7 | NC_004812.1 | + | 111330 | 0.7 | 0.756299 |
Target: 5'- -uCCU--GUCGGggGGuCGCC-CGCCCg -3' miRNA: 3'- cuGGAagUAGCCuuCC-GUGGcGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 112916 | 0.7 | 0.756299 |
Target: 5'- cGCCcUCGcCGcGAAGGCAgCGCgGCCCg -3' miRNA: 3'- cUGGaAGUaGC-CUUCCGUgGCG-UGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 91079 | 0.7 | 0.765798 |
Target: 5'- aGACCgggggCGagGGggGGCGCCagggGCGCgCCg -3' miRNA: 3'- -CUGGaa---GUagCCuuCCGUGG----CGUG-GG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 19144 | 0.7 | 0.765798 |
Target: 5'- cGGCCagcgCcgCGGggGGCGCggcggcgGCGCCCc -3' miRNA: 3'- -CUGGaa--GuaGCCuuCCGUGg------CGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 98628 | 0.7 | 0.765798 |
Target: 5'- cGGCCgUCG-CGGcc-GCGCUGCGCCCg -3' miRNA: 3'- -CUGGaAGUaGCCuucCGUGGCGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 83844 | 0.7 | 0.766741 |
Target: 5'- cGGCCgUCuccggggggagcggCGGggGGCGgCGCugCCg -3' miRNA: 3'- -CUGGaAGua------------GCCuuCCGUgGCGugGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 116449 | 0.69 | 0.771441 |
Target: 5'- uACCUUUugucccccggaGGggGGCGCCGgcCACCCc -3' miRNA: 3'- cUGGAAGuag--------CCuuCCGUGGC--GUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 59894 | 0.7 | 0.736982 |
Target: 5'- cGGCCcUCGU-GGcccGGCACCGCguGCCCg -3' miRNA: 3'- -CUGGaAGUAgCCuu-CCGUGGCG--UGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 3232 | 0.7 | 0.727183 |
Target: 5'- cACCUUCcaccCGGcgcccgccaGGGGCGcCCGCGCCCc -3' miRNA: 3'- cUGGAAGua--GCC---------UUCCGU-GGCGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 68181 | 0.7 | 0.727183 |
Target: 5'- cGGCCgcgggCGGggGcGCGCCGgaCGCCCg -3' miRNA: 3'- -CUGGaaguaGCCuuC-CGUGGC--GUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 82532 | 0.71 | 0.696327 |
Target: 5'- aGGCCc----CGGGAGGCGCCGCccguggccaggaaGCCCu -3' miRNA: 3'- -CUGGaaguaGCCUUCCGUGGCG-------------UGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 66652 | 0.71 | 0.697332 |
Target: 5'- aGGCg--CGUCGGGAGGCgcGCCGcCGCUCg -3' miRNA: 3'- -CUGgaaGUAGCCUUCCG--UGGC-GUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 71026 | 0.71 | 0.697332 |
Target: 5'- gGGCCggCGUCuggagccgcuggGGAGGGCgGCCGC-CCCu -3' miRNA: 3'- -CUGGaaGUAG------------CCUUCCG-UGGCGuGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 22900 | 0.71 | 0.697332 |
Target: 5'- cGGCCgaggugCGcGggGGCgugGCCGCGCCCc -3' miRNA: 3'- -CUGGaagua-GC-CuuCCG---UGGCGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 101719 | 0.71 | 0.70435 |
Target: 5'- cGAUCUUgGcCGGggGGCGggcccuggggucccCCGUGCCCg -3' miRNA: 3'- -CUGGAAgUaGCCuuCCGU--------------GGCGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 129639 | 0.71 | 0.70635 |
Target: 5'- gGGCCcUCGUCGGAgagggcggccgccAGGCGgCGCugCg -3' miRNA: 3'- -CUGGaAGUAGCCU-------------UCCGUgGCGugGg -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 69745 | 0.71 | 0.707348 |
Target: 5'- -uCCggCAcCGGggGGCACCaguGCGCUCg -3' miRNA: 3'- cuGGaaGUaGCCuuCCGUGG---CGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 154537 | 0.7 | 0.717302 |
Target: 5'- gGACUggUAgacgCGGggGGCGcgcccccucccCCGCGCCCc -3' miRNA: 3'- -CUGGaaGUa---GCCuuCCGU-----------GGCGUGGG- -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 31394 | 0.7 | 0.725213 |
Target: 5'- uGACgUUCucgagcaggacCGGcAGGCGCCGCGCCa -3' miRNA: 3'- -CUGgAAGua---------GCCuUCCGUGGCGUGGg -5' |
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21392 | 3' | -55.7 | NC_004812.1 | + | 122185 | 0.69 | 0.775178 |
Target: 5'- gGGCCUgggUCuggugggCGGGcugucuGGGCGCCGC-CCCg -3' miRNA: 3'- -CUGGA---AGua-----GCCU------UCCGUGGCGuGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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