miRNA display CGI


Results 101 - 120 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 94260 0.69 0.784432
Target:  5'- cGACCcacgcgCcgCGGgcGcGCGCCGCgGCCCg -3'
miRNA:   3'- -CUGGaa----GuaGCCuuC-CGUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 151551 0.69 0.784432
Target:  5'- gGGCCggggcCGG-GGGCGCgGCGCCCu -3'
miRNA:   3'- -CUGGaaguaGCCuUCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 72197 0.69 0.784432
Target:  5'- gGGCCccgggUCGUCGcGGGGCGuCCGCGgCCu -3'
miRNA:   3'- -CUGGa----AGUAGCcUUCCGU-GGCGUgGG- -5'
21392 3' -55.7 NC_004812.1 + 32407 0.69 0.793548
Target:  5'- cGGCCUcgGUCGccgccgcGGGCgcgGCCGCGCCCa -3'
miRNA:   3'- -CUGGAagUAGCcu-----UCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 56246 0.69 0.793548
Target:  5'- cGACUcgUCcgCGGggGcGCGCCccuGCGCCUc -3'
miRNA:   3'- -CUGGa-AGuaGCCuuC-CGUGG---CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 19144 0.7 0.765798
Target:  5'- cGGCCagcgCcgCGGggGGCGCggcggcgGCGCCCc -3'
miRNA:   3'- -CUGGaa--GuaGCCuuCCGUGg------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 91079 0.7 0.765798
Target:  5'- aGACCgggggCGagGGggGGCGCCagggGCGCgCCg -3'
miRNA:   3'- -CUGGaa---GUagCCuuCCGUGG----CGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 101719 0.71 0.70435
Target:  5'- cGAUCUUgGcCGGggGGCGggcccuggggucccCCGUGCCCg -3'
miRNA:   3'- -CUGGAAgUaGCCuuCCGU--------------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 129639 0.71 0.70635
Target:  5'- gGGCCcUCGUCGGAgagggcggccgccAGGCGgCGCugCg -3'
miRNA:   3'- -CUGGaAGUAGCCU-------------UCCGUgGCGugGg -5'
21392 3' -55.7 NC_004812.1 + 69745 0.71 0.707348
Target:  5'- -uCCggCAcCGGggGGCACCaguGCGCUCg -3'
miRNA:   3'- cuGGaaGUaGCCuuCCGUGG---CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 154537 0.7 0.717302
Target:  5'- gGACUggUAgacgCGGggGGCGcgcccccucccCCGCGCCCc -3'
miRNA:   3'- -CUGGaaGUa---GCCuuCCGU-----------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 31394 0.7 0.725213
Target:  5'- uGACgUUCucgagcaggacCGGcAGGCGCCGCGCCa -3'
miRNA:   3'- -CUGgAAGua---------GCCuUCCGUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 68181 0.7 0.727183
Target:  5'- cGGCCgcgggCGGggGcGCGCCGgaCGCCCg -3'
miRNA:   3'- -CUGGaaguaGCCuuC-CGUGGC--GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 3232 0.7 0.727183
Target:  5'- cACCUUCcaccCGGcgcccgccaGGGGCGcCCGCGCCCc -3'
miRNA:   3'- cUGGAAGua--GCC---------UUCCGU-GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 59894 0.7 0.736982
Target:  5'- cGGCCcUCGU-GGcccGGCACCGCguGCCCg -3'
miRNA:   3'- -CUGGaAGUAgCCuu-CCGUGGCG--UGGG- -5'
21392 3' -55.7 NC_004812.1 + 111968 0.7 0.746691
Target:  5'- cGCCgggGUCGGAgaAGGgGCCGCgGCCCc -3'
miRNA:   3'- cUGGaagUAGCCU--UCCgUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 111391 0.7 0.755343
Target:  5'- uGACg-UCAUCGGcGGGCACgccgucuCGCugCCg -3'
miRNA:   3'- -CUGgaAGUAGCCuUCCGUG-------GCGugGG- -5'
21392 3' -55.7 NC_004812.1 + 84684 0.7 0.756299
Target:  5'- gGACCcgC-UCGGGgccAGGC-CCGCACCg -3'
miRNA:   3'- -CUGGaaGuAGCCU---UCCGuGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 111330 0.7 0.756299
Target:  5'- -uCCU--GUCGGggGGuCGCC-CGCCCg -3'
miRNA:   3'- cuGGAagUAGCCuuCC-GUGGcGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 112916 0.7 0.756299
Target:  5'- cGCCcUCGcCGcGAAGGCAgCGCgGCCCg -3'
miRNA:   3'- cUGGaAGUaGC-CUUCCGUgGCG-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.