miRNA display CGI


Results 41 - 60 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 56070 0.71 0.697332
Target:  5'- cGGCgUUCGaCGGc-GGCcucGCCGCGCCCg -3'
miRNA:   3'- -CUGgAAGUaGCCuuCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 109401 0.73 0.595586
Target:  5'- aGGCa---GUCGG--GGCGCCGCGCCCc -3'
miRNA:   3'- -CUGgaagUAGCCuuCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 41243 0.8 0.25777
Target:  5'- cGCCUUCGUCuGucGGCGCCGCGuCCCc -3'
miRNA:   3'- cUGGAAGUAGcCuuCCGUGGCGU-GGG- -5'
21392 3' -55.7 NC_004812.1 + 49186 0.71 0.697332
Target:  5'- cGCCgcgCGgcCGGuGGGCcugGCCGCACCCg -3'
miRNA:   3'- cUGGaa-GUa-GCCuUCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 126199 0.8 0.251685
Target:  5'- uGACCUUCA-CGugccuGAAGGcCGCCGCGCCCc -3'
miRNA:   3'- -CUGGAAGUaGC-----CUUCC-GUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 83192 0.69 0.793548
Target:  5'- aGCUcgCggCGGGAGGCgcggcgGCCGCGCUCg -3'
miRNA:   3'- cUGGaaGuaGCCUUCCG------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 42441 0.78 0.318011
Target:  5'- -cCCUUCcuccggCGGAAGGCcgGCCGCAUCCa -3'
miRNA:   3'- cuGGAAGua----GCCUUCCG--UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 60456 0.69 0.784432
Target:  5'- cGCCcUCGaaccagCGGAAGGCGgCGCggucGCCCg -3'
miRNA:   3'- cUGGaAGUa-----GCCUUCCGUgGCG----UGGG- -5'
21392 3' -55.7 NC_004812.1 + 31319 0.69 0.783512
Target:  5'- aGGCCUUCcgCGcgcGGCGCucucgcgCGCGCCCg -3'
miRNA:   3'- -CUGGAAGuaGCcuuCCGUG-------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 77256 0.69 0.774246
Target:  5'- uGCCcUCG-CGG-GGGCGCCGCuggcgcuGCCCg -3'
miRNA:   3'- cUGGaAGUaGCCuUCCGUGGCG-------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 52695 0.7 0.765798
Target:  5'- gGACCUgggCuUCGGGgacGGGC-CCGCGCUg -3'
miRNA:   3'- -CUGGAa--GuAGCCU---UCCGuGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 34133 0.7 0.727183
Target:  5'- cACCUUCcaccCGGcgcccgccaGGGGCGcCCGCGCCCc -3'
miRNA:   3'- cUGGAAGua--GCC---------UUCCGU-GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 29028 0.7 0.717302
Target:  5'- gGACUggUAgacgCGGggGGCGcgcccccucccCCGCGCCCc -3'
miRNA:   3'- -CUGGaaGUa---GCCuuCCGU-----------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 73910 0.71 0.68726
Target:  5'- aGCCgcCGUCGGccGGCGCCcagcgGCGCCUg -3'
miRNA:   3'- cUGGaaGUAGCCuuCCGUGG-----CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 124244 0.71 0.677143
Target:  5'- gGGCCUgg--CGGggGGCGCgCGCggcggcGCCCc -3'
miRNA:   3'- -CUGGAaguaGCCuuCCGUG-GCG------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 1003 0.72 0.626177
Target:  5'- aGGCCUgcc-CGGccGGgGCCGCGCCCc -3'
miRNA:   3'- -CUGGAaguaGCCuuCCgUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 95631 0.72 0.605766
Target:  5'- uGGCCgUCGUCGucGGGUcCCGCACCa -3'
miRNA:   3'- -CUGGaAGUAGCcuUCCGuGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 2841 0.74 0.535299
Target:  5'- cGGCCacUCcUCGGggGGCACgGCGUCCa -3'
miRNA:   3'- -CUGGa-AGuAGCCuuCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 21814 0.74 0.522498
Target:  5'- cGACggcgUCAUCGGAuccuccgaacccgaGGGCGUCGCGCCCu -3'
miRNA:   3'- -CUGga--AGUAGCCU--------------UCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 15999 0.75 0.477293
Target:  5'- cACCggugcaGGAGGGCGCCGgCGCCCa -3'
miRNA:   3'- cUGGaaguagCCUUCCGUGGC-GUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.