miRNA display CGI


Results 61 - 80 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 29028 0.7 0.717302
Target:  5'- gGACUggUAgacgCGGggGGCGcgcccccucccCCGCGCCCc -3'
miRNA:   3'- -CUGGaaGUa---GCCuuCCGU-----------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 16747 0.7 0.746691
Target:  5'- gGGCCUggggcucaGUCGGggGGCGCgGgGgCCg -3'
miRNA:   3'- -CUGGAag------UAGCCuuCCGUGgCgUgGG- -5'
21392 3' -55.7 NC_004812.1 + 27454 0.76 0.405177
Target:  5'- uGGCCgacgCAgacgCGGgcGGCGCCGCgcGCCCg -3'
miRNA:   3'- -CUGGaa--GUa---GCCuuCCGUGGCG--UGGG- -5'
21392 3' -55.7 NC_004812.1 + 98904 0.74 0.493432
Target:  5'- -cCCUUCGuUCGGggGGUuugcggcgcacgcgGCCGgCGCCCg -3'
miRNA:   3'- cuGGAAGU-AGCCuuCCG--------------UGGC-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 93219 0.74 0.525442
Target:  5'- gGACCgUCGgcgCGGGcAGGCcCCGCGCCUc -3'
miRNA:   3'- -CUGGaAGUa--GCCU-UCCGuGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 107385 0.74 0.535299
Target:  5'- cGCgaUCGccUCGGAcGGCACCGCcCCCg -3'
miRNA:   3'- cUGgaAGU--AGCCUuCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 138267 0.72 0.605766
Target:  5'- cGGCCg----CGGucGcGCGCCGCGCCCu -3'
miRNA:   3'- -CUGGaaguaGCCuuC-CGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 32771 0.72 0.640479
Target:  5'- gGGCCUcCAUUGGcccGGGCGCCcgggccccgcccgcgGCACCCc -3'
miRNA:   3'- -CUGGAaGUAGCCu--UCCGUGG---------------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 119398 0.71 0.677143
Target:  5'- cGGCCgcgUCGUCGuGGAcGGCcCCGCGCUg -3'
miRNA:   3'- -CUGGa--AGUAGC-CUU-CCGuGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 143838 0.71 0.68726
Target:  5'- cGCCUUUcUCGGgcGGUACCaCAUCCu -3'
miRNA:   3'- cUGGAAGuAGCCuuCCGUGGcGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 31226 0.68 0.84491
Target:  5'- aACCagcaCGUCGGGAGGUGCguccaCGCGCUCg -3'
miRNA:   3'- cUGGaa--GUAGCCUUCCGUG-----GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 148903 0.68 0.836788
Target:  5'- aGACCcccgCcgCGGAcucGGCGcgacccCCGCGCCCg -3'
miRNA:   3'- -CUGGaa--GuaGCCUu--CCGU------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 78278 0.7 0.765798
Target:  5'- cGCCUuccUCAUCGaGAacgGGGC-CCGCACgCa -3'
miRNA:   3'- cUGGA---AGUAGC-CU---UCCGuGGCGUGgG- -5'
21392 3' -55.7 NC_004812.1 + 105410 0.69 0.775178
Target:  5'- uGCCggcgcUCggCGGGGcccGGCGcCCGCGCCCg -3'
miRNA:   3'- cUGGa----AGuaGCCUU---CCGU-GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 60456 0.69 0.784432
Target:  5'- cGCCcUCGaaccagCGGAAGGCGgCGCggucGCCCg -3'
miRNA:   3'- cUGGaAGUa-----GCCUUCCGUgGCG----UGGG- -5'
21392 3' -55.7 NC_004812.1 + 83192 0.69 0.793548
Target:  5'- aGCUcgCggCGGGAGGCgcggcgGCCGCGCUCg -3'
miRNA:   3'- cUGGaaGuaGCCUUCCG------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 138135 0.69 0.811338
Target:  5'- cGCCccUCGUCcuGGAGGGCACguacaCGCACgCCg -3'
miRNA:   3'- cUGGa-AGUAG--CCUUCCGUG-----GCGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 26659 0.68 0.819994
Target:  5'- -uCCUUCAUCacc-GGCACCGUGgCCCg -3'
miRNA:   3'- cuGGAAGUAGccuuCCGUGGCGU-GGG- -5'
21392 3' -55.7 NC_004812.1 + 79839 0.68 0.82848
Target:  5'- uGGCCagUAcCGGggGGC-CCuggaGCACCCg -3'
miRNA:   3'- -CUGGaaGUaGCCuuCCGuGG----CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 3385 0.68 0.836788
Target:  5'- aGGCCUcgagggCGgcggCGGAGGGCGCCgGCguguggcuggGCCCc -3'
miRNA:   3'- -CUGGAa-----GUa---GCCUUCCGUGG-CG----------UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.