miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 153086 0.69 0.775178
Target:  5'- gGGCCUgggUCuggugggCGGGcugucuGGGCGCCGC-CCCg -3'
miRNA:   3'- -CUGGA---AGua-----GCCU------UCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 97624 0.69 0.783512
Target:  5'- uGACgaUCGcgcucUCGGAcGGCGCCGCcaucucgGCCCc -3'
miRNA:   3'- -CUGgaAGU-----AGCCUuCCGUGGCG-------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 18710 0.69 0.784432
Target:  5'- aGCCgcaguagcUCcgCGGcgcuGGGGCGCCGCGCgCCa -3'
miRNA:   3'- cUGGa-------AGuaGCC----UUCCGUGGCGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 105939 0.69 0.811338
Target:  5'- cGCCUUuuauacacgcCGUCGGgcGGCgagucGCCGgGCCCc -3'
miRNA:   3'- cUGGAA----------GUAGCCuuCCG-----UGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 28244 0.69 0.811338
Target:  5'- cGCCUcgUCGUCGu--GGaCGCCGUGCCCc -3'
miRNA:   3'- cUGGA--AGUAGCcuuCC-GUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 79839 0.68 0.82848
Target:  5'- uGGCCagUAcCGGggGGC-CCuggaGCACCCg -3'
miRNA:   3'- -CUGGaaGUaGCCuuCCGuGG----CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 3385 0.68 0.836788
Target:  5'- aGGCCUcgagggCGgcggCGGAGGGCGCCgGCguguggcuggGCCCc -3'
miRNA:   3'- -CUGGAa-----GUa---GCCUUCCGUGG-CG----------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 143838 0.71 0.68726
Target:  5'- cGCCUUUcUCGGgcGGUACCaCAUCCu -3'
miRNA:   3'- cUGGAAGuAGCCuuCCGUGGcGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 119398 0.71 0.677143
Target:  5'- cGGCCgcgUCGUCGuGGAcGGCcCCGCGCUg -3'
miRNA:   3'- -CUGGa--AGUAGC-CUU-CCGuGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 32771 0.72 0.640479
Target:  5'- gGGCCUcCAUUGGcccGGGCGCCcgggccccgcccgcgGCACCCc -3'
miRNA:   3'- -CUGGAaGUAGCCu--UCCGUGG---------------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 4827 0.68 0.860571
Target:  5'- aGGCC-UCGUCGGcguccaGGGGCACgGC-CCg -3'
miRNA:   3'- -CUGGaAGUAGCC------UUCCGUGgCGuGGg -5'
21392 3' -55.7 NC_004812.1 + 118391 0.68 0.863606
Target:  5'- cGCCUUCGacuucuUCGuGggGGUcgcggauguggaccuGCCGgGCCCg -3'
miRNA:   3'- cUGGAAGU------AGC-CuuCCG---------------UGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 91492 0.67 0.868096
Target:  5'- aGACCgac--CGGcAGGgGCCGCGCCa -3'
miRNA:   3'- -CUGGaaguaGCCuUCCgUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 30085 0.67 0.87541
Target:  5'- gGGCCcUCG-CGG-GGGCGCgGC-CCCg -3'
miRNA:   3'- -CUGGaAGUaGCCuUCCGUGgCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 82798 0.67 0.87541
Target:  5'- cGAgCUgggGUgGGAgcgcgGGGCGCCGgCGCCCg -3'
miRNA:   3'- -CUgGAag-UAgCCU-----UCCGUGGC-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 27454 0.76 0.405177
Target:  5'- uGGCCgacgCAgacgCGGgcGGCGCCGCgcGCCCg -3'
miRNA:   3'- -CUGGaa--GUa---GCCuuCCGUGGCG--UGGG- -5'
21392 3' -55.7 NC_004812.1 + 98904 0.74 0.493432
Target:  5'- -cCCUUCGuUCGGggGGUuugcggcgcacgcgGCCGgCGCCCg -3'
miRNA:   3'- cuGGAAGU-AGCCuuCCG--------------UGGC-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 93219 0.74 0.525442
Target:  5'- gGACCgUCGgcgCGGGcAGGCcCCGCGCCUc -3'
miRNA:   3'- -CUGGaAGUa--GCCU-UCCGuGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 107385 0.74 0.535299
Target:  5'- cGCgaUCGccUCGGAcGGCACCGCcCCCg -3'
miRNA:   3'- cUGgaAGU--AGCCUuCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 138267 0.72 0.605766
Target:  5'- cGGCCg----CGGucGcGCGCCGCGCCCu -3'
miRNA:   3'- -CUGGaaguaGCCuuC-CGUGGCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.