miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 91885 0.69 0.504254
Target:  5'- cGGGGGcGcgcauGCCcGCgGCCUCGGGGAa- -3'
miRNA:   3'- -CCCCCaCu----CGGaCG-CGGAGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 108468 0.69 0.504254
Target:  5'- --cGGc--GCC-GCGCCUCGAGGACGg -3'
miRNA:   3'- cccCCacuCGGaCGCGGAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 32291 0.69 0.532269
Target:  5'- cGGGGccGUGAG-CUGCuCCUCGGGGGa- -3'
miRNA:   3'- -CCCC--CACUCgGACGcGGAGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 104780 0.69 0.513524
Target:  5'- cGGGGGguccagGGGCCguaGgGCUggUGGGGGCGg -3'
miRNA:   3'- -CCCCCa-----CUCGGa--CgCGGa-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 100083 0.69 0.522864
Target:  5'- cGGGGGccGGGCCgccggaGCGCCUuauaucCGcGGGCGg -3'
miRNA:   3'- -CCCCCa-CUCGGa-----CGCGGA------GCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 91891 0.69 0.504254
Target:  5'- uGGGGGUGAagcaGCCcgcggGgGCCcUGAGGGCc -3'
miRNA:   3'- -CCCCCACU----CGGa----CgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 121778 0.69 0.501487
Target:  5'- cGGGGGcagcgagggccgcuUGGGCCcucGCGUggCGGGGGCGg -3'
miRNA:   3'- -CCCCC--------------ACUCGGa--CGCGgaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 56257 0.69 0.495056
Target:  5'- cGGGGGcGcGCCccUGCGCCUCGcccGcGGCGg -3'
miRNA:   3'- -CCCCCaCuCGG--ACGCGGAGCu--C-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 47466 0.69 0.504254
Target:  5'- -cGGGUGAGCCgcgucacccgccUGCuGCCUcagaagaucacCGGGGACGu -3'
miRNA:   3'- ccCCCACUCGG------------ACG-CGGA-----------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 123505 0.69 0.504254
Target:  5'- cGGGGGUcugGGGUCggGCGCCgggagcgcggCGGGGAgGa -3'
miRNA:   3'- -CCCCCA---CUCGGa-CGCGGa---------GCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 155312 0.69 0.485935
Target:  5'- cGGGGGUcGGcGCCc-CGCCUCcGGGGACc -3'
miRNA:   3'- -CCCCCA-CU-CGGacGCGGAG-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 44196 0.69 0.485935
Target:  5'- cGGGGGUGGGgCUcgGCGgCggCGcGGACGg -3'
miRNA:   3'- -CCCCCACUCgGA--CGCgGa-GCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 152680 0.69 0.494141
Target:  5'- cGGGGGcagcgagggcgcuUGGGCCcucGCGUggCGGGGGCGg -3'
miRNA:   3'- -CCCCC-------------ACUCGGa--CGCGgaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 79459 0.69 0.532269
Target:  5'- gGGcGGGcUGccGGCCgagacgcgGCGCCUggcCGAGGACGc -3'
miRNA:   3'- -CC-CCC-AC--UCGGa-------CGCGGA---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 29804 0.69 0.485935
Target:  5'- cGGGGGUcGGcGCCc-CGCCUCcGGGGACc -3'
miRNA:   3'- -CCCCCA-CU-CGGacGCGGAG-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 140882 0.68 0.580094
Target:  5'- cGGGGGUGGGUg-GCGggaCgcgCGGGGGCa -3'
miRNA:   3'- -CCCCCACUCGgaCGCg--Ga--GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 20289 0.68 0.580094
Target:  5'- cGGGGGUGGGCggcGCGCCggCGcAGcGCGc -3'
miRNA:   3'- -CCCCCACUCGga-CGCGGa-GC-UCcUGC- -5'
21392 5' -61.7 NC_004812.1 + 86007 0.68 0.541733
Target:  5'- uGGGGUGGGU--GUGCCggggCGuGGGCGg -3'
miRNA:   3'- cCCCCACUCGgaCGCGGa---GCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 24503 0.68 0.580094
Target:  5'- -cGGG-GGGCCcccGCGCCgCGGGGGCu -3'
miRNA:   3'- ccCCCaCUCGGa--CGCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 79445 0.68 0.589784
Target:  5'- uGGGGUGGcGCCUuccGCGCggcggCGGGGGCc -3'
miRNA:   3'- cCCCCACU-CGGA---CGCGga---GCUCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.