miRNA display CGI


Results 101 - 120 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 129017 0.67 0.5995
Target:  5'- cGGGcccgGGGCCgGCgGCCcCGGGGGCGg -3'
miRNA:   3'- cCCCca--CUCGGaCG-CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 82845 0.67 0.5995
Target:  5'- cGGGGGUGcgcgcGCCgaGCGCggggUGAGGugGu -3'
miRNA:   3'- -CCCCCACu----CGGa-CGCGga--GCUCCugC- -5'
21392 5' -61.7 NC_004812.1 + 25124 0.67 0.60924
Target:  5'- cGGGGcGUGGGCC-GCauaaugagauCCUCGAcgGGGCGg -3'
miRNA:   3'- -CCCC-CACUCGGaCGc---------GGAGCU--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 7684 0.67 0.618994
Target:  5'- cGGGGGUGGGCggGCGCg--GGGGuCGc -3'
miRNA:   3'- -CCCCCACUCGgaCGCGgagCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 121984 0.67 0.618994
Target:  5'- uGGGcUGGGCCUgaGCGCCgggCG-GGACu -3'
miRNA:   3'- cCCCcACUCGGA--CGCGGa--GCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 3509 0.67 0.599501
Target:  5'- cGGGcccgGGGCCgGCgGCCcCGGGGGCGg -3'
miRNA:   3'- cCCCca--CUCGGaCG-CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 20598 0.67 0.600474
Target:  5'- cGGuGGcGAGgacgcgcgccugcgaCUGCGUCUCGGGGGCGg -3'
miRNA:   3'- cCC-CCaCUCg--------------GACGCGGAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 154156 0.67 0.60924
Target:  5'- aGGGcGUccucGGCCgGCGCCuaUCGGGGAUGa -3'
miRNA:   3'- cCCC-CAc---UCGGaCGCGG--AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 74719 0.67 0.60924
Target:  5'- -cGGGUGcuGGCCUGgGCC-CG-GGACu -3'
miRNA:   3'- ccCCCAC--UCGGACgCGGaGCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 84637 0.67 0.60924
Target:  5'- cGGGGcgcGUGAGCCUcccgcggcGCGCgUCGcggcAGGGCc -3'
miRNA:   3'- -CCCC---CACUCGGA--------CGCGgAGC----UCCUGc -5'
21392 5' -61.7 NC_004812.1 + 30227 0.67 0.615091
Target:  5'- uGGGGGgcgcgcgcgggcgGGGCUcGCgGCCgCGGGGACa -3'
miRNA:   3'- -CCCCCa------------CUCGGaCG-CGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 38585 0.67 0.618994
Target:  5'- cGGGGGUGGGCggGCGCg--GGGGuCGc -3'
miRNA:   3'- -CCCCCACUCGgaCGCGgagCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 54546 0.67 0.598528
Target:  5'- cGGGGGcGGcgacuccgacggcGCCgggGCGCCgCGGGaGACGg -3'
miRNA:   3'- -CCCCCaCU-------------CGGa--CGCGGaGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 142377 0.67 0.648285
Target:  5'- cGGGGUGGGaCCU-CGCaC-CGGGGAUa -3'
miRNA:   3'- cCCCCACUC-GGAcGCG-GaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 117622 0.67 0.648285
Target:  5'- gGGGGGgcggcgcGGGCCgccggGCGCggCGGGGucGCGg -3'
miRNA:   3'- -CCCCCa------CUCGGa----CGCGgaGCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 93554 0.67 0.638524
Target:  5'- uGGGGGcgGAGCCagacgccccCGCCUcccCGGGGGCc -3'
miRNA:   3'- -CCCCCa-CUCGGac-------GCGGA---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 15750 0.67 0.632664
Target:  5'- cGGGGGcc-GCCcGCGCCgUCagccgggcccugggcGAGGACGa -3'
miRNA:   3'- -CCCCCacuCGGaCGCGG-AG---------------CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 15336 0.67 0.628758
Target:  5'- aGGGGGaagUGAcGCa-GCGCCUgGAGG-CGu -3'
miRNA:   3'- -CCCCC---ACU-CGgaCGCGGAgCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 5712 0.67 0.628758
Target:  5'- gGGGGGgcggGGGUCUGcCGCgggagGAGGGCGc -3'
miRNA:   3'- -CCCCCa---CUCGGAC-GCGgag--CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 102177 0.67 0.61997
Target:  5'- cGGGGGcccgcggcGGGCCcaucgacacccggcgGCGUCUgGAGGACa -3'
miRNA:   3'- -CCCCCa-------CUCGGa--------------CGCGGAgCUCCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.