miRNA display CGI


Results 121 - 140 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 121984 0.67 0.618994
Target:  5'- uGGGcUGGGCCUgaGCGCCgggCG-GGACu -3'
miRNA:   3'- cCCCcACUCGGA--CGCGGa--GCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 68586 0.67 0.638524
Target:  5'- cGGGGGacgccGCCgUGUGgUUCGAGGACc -3'
miRNA:   3'- -CCCCCacu--CGG-ACGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 7684 0.67 0.618994
Target:  5'- cGGGGGUGGGCggGCGCg--GGGGuCGc -3'
miRNA:   3'- -CCCCCACUCGgaCGCGgagCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 155735 0.67 0.615091
Target:  5'- uGGGGGgcgcgcgcgggcgGGGCUcGCgGCCgCGGGGACa -3'
miRNA:   3'- -CCCCCa------------CUCGGaCG-CGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 150633 0.67 0.609239
Target:  5'- cGGGGcGUGGGCC-GCauaaugagauCCUCGAcgGGGCGg -3'
miRNA:   3'- -CCCC-CACUCGGaCGc---------GGAGCU--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 138001 0.67 0.609239
Target:  5'- gGGGGGgggGAGCggggGCGCCcCGuauacaaaagggGGGGCGa -3'
miRNA:   3'- -CCCCCa--CUCGga--CGCGGaGC------------UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 93554 0.67 0.638524
Target:  5'- uGGGGGcgGAGCCagacgccccCGCCUcccCGGGGGCc -3'
miRNA:   3'- -CCCCCa-CUCGGac-------GCGGA---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 152818 0.66 0.706351
Target:  5'- cGGGccugaGGUcGGGCCUgaGCGCCgggGGGGACu -3'
miRNA:   3'- -CCC-----CCA-CUCGGA--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 147869 0.66 0.67747
Target:  5'- uGGGGGgucgGGGCCgucgagGCG-UUCGGGGcucGCGa -3'
miRNA:   3'- -CCCCCa---CUCGGa-----CGCgGAGCUCC---UGC- -5'
21392 5' -61.7 NC_004812.1 + 155400 0.66 0.67747
Target:  5'- cGGGGGccGGGCC-GgGCCgggCGuGGugGc -3'
miRNA:   3'- -CCCCCa-CUCGGaCgCGGa--GCuCCugC- -5'
21392 5' -61.7 NC_004812.1 + 7723 0.66 0.67747
Target:  5'- cGGGGGUcu-CC-GCGCCgggCGAGGcCGg -3'
miRNA:   3'- -CCCCCAcucGGaCGCGGa--GCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 23939 0.66 0.710167
Target:  5'- gGGGagcacaucuagacgaGGUG-GCCaGCGaCCcCGAGGACGu -3'
miRNA:   3'- -CCC---------------CCACuCGGaCGC-GGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 107850 0.66 0.70635
Target:  5'- cGGaGGcGGGgCUcCGCCUcCGAGGGCGg -3'
miRNA:   3'- cCC-CCaCUCgGAcGCGGA-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 121917 0.66 0.70635
Target:  5'- cGGGccugaGGUcGGGCCUgaGCGCCgggGGGGACu -3'
miRNA:   3'- -CCC-----CCA-CUCGGA--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 106080 0.66 0.70635
Target:  5'- -uGGGUGucgcGGCCUGCGCCUCcucuguccgacuGAGucucgcgaaccGACGg -3'
miRNA:   3'- ccCCCAC----UCGGACGCGGAG------------CUC-----------CUGC- -5'
21392 5' -61.7 NC_004812.1 + 22914 0.66 0.69677
Target:  5'- gGGGGcGUG-GCC-GCGCCcccgCGccuGGACGc -3'
miRNA:   3'- -CCCC-CACuCGGaCGCGGa---GCu--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 156371 0.66 0.687141
Target:  5'- gGGGGGgaggaGAGCg-GgGCCgCGGGGGCc -3'
miRNA:   3'- -CCCCCa----CUCGgaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 59625 0.66 0.687141
Target:  5'- cGGGGGUGgcGGCCccGCaGCCgcaUGAGGGUGg -3'
miRNA:   3'- -CCCCCAC--UCGGa-CG-CGGa--GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 103981 0.66 0.687141
Target:  5'- gGGGGGcUGcGGCauaauCUGCGCCUggcUGAGG-CGg -3'
miRNA:   3'- -CCCCC-AC-UCG-----GACGCGGA---GCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 71907 0.66 0.67747
Target:  5'- cGGGcGGcgcgGcGCCgcggGCGCUgcagcggCGAGGACGg -3'
miRNA:   3'- -CCC-CCa---CuCGGa---CGCGGa------GCUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.