miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 78340 0.68 0.555076
Target:  5'- cGGGccuccuggaccuaacGGUGAGCCUGCuCCcgCGaAGGACc -3'
miRNA:   3'- -CCC---------------CCACUCGGACGcGGa-GC-UCCUGc -5'
21392 5' -61.7 NC_004812.1 + 77740 0.68 0.559865
Target:  5'- aGGGGGUGggggcGGCCUccgcccuccccggGCuCCUCGgGGGACa -3'
miRNA:   3'- -CCCCCAC-----UCGGA-------------CGcGGAGC-UCCUGc -5'
21392 5' -61.7 NC_004812.1 + 49566 0.68 0.560824
Target:  5'- uGGGGG-GGGCCUcCGCgUCGAacucGGCGg -3'
miRNA:   3'- -CCCCCaCUCGGAcGCGgAGCUc---CUGC- -5'
21392 5' -61.7 NC_004812.1 + 5825 0.68 0.570439
Target:  5'- cGGcGGGcucugcGGGCCggcgGCGCgCUCGGGaGGCGg -3'
miRNA:   3'- -CC-CCCa-----CUCGGa---CGCG-GAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 99967 0.68 0.570439
Target:  5'- --cGGUGGGCC-GUGCCggCGGGGGCc -3'
miRNA:   3'- cccCCACUCGGaCGCGGa-GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 36726 0.68 0.57044
Target:  5'- cGGcGGGcucugcGGGCCggcgGCGCgCUCGGGaGGCGg -3'
miRNA:   3'- -CC-CCCa-----CUCGGa---CGCG-GAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 140882 0.68 0.580094
Target:  5'- cGGGGGUGGGUg-GCGggaCgcgCGGGGGCa -3'
miRNA:   3'- -CCCCCACUCGgaCGCg--Ga--GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 20289 0.68 0.580094
Target:  5'- cGGGGGUGGGCggcGCGCCggCGcAGcGCGc -3'
miRNA:   3'- -CCCCCACUCGga-CGCGGa-GC-UCcUGC- -5'
21392 5' -61.7 NC_004812.1 + 24503 0.68 0.580094
Target:  5'- -cGGG-GGGCCcccGCGCCgCGGGGGCu -3'
miRNA:   3'- ccCCCaCUCGGa--CGCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 69959 0.68 0.580095
Target:  5'- aGGGG-GGGUCUGUGgC-CGGGGGCu -3'
miRNA:   3'- cCCCCaCUCGGACGCgGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 14529 0.68 0.580095
Target:  5'- uGGGcGGcagcUGGGCC-GCGaCCgCGGGGGCGg -3'
miRNA:   3'- -CCC-CC----ACUCGGaCGC-GGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 59627 0.68 0.580095
Target:  5'- uGGGGGUGGGgCgggaGCgGCCgcgGGGGAUGa -3'
miRNA:   3'- -CCCCCACUCgGa---CG-CGGag-CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 79445 0.68 0.589784
Target:  5'- uGGGGUGGcGCCUuccGCGCggcggCGGGGGCc -3'
miRNA:   3'- cCCCCACU-CGGA---CGCGga---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 67199 0.68 0.589784
Target:  5'- cGGGGGUGA-CCgcggcggcgGCGCC-CGcGGGCu -3'
miRNA:   3'- -CCCCCACUcGGa--------CGCGGaGCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 41761 0.68 0.589784
Target:  5'- uGGGGcugGGGCUUggcgcgccGCGCCUCGGccgcucGGGCGg -3'
miRNA:   3'- cCCCCa--CUCGGA--------CGCGGAGCU------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 54546 0.67 0.598528
Target:  5'- cGGGGGcGGcgacuccgacggcGCCgggGCGCCgCGGGaGACGg -3'
miRNA:   3'- -CCCCCaCU-------------CGGa--CGCGGaGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 82845 0.67 0.5995
Target:  5'- cGGGGGUGcgcgcGCCgaGCGCggggUGAGGugGu -3'
miRNA:   3'- -CCCCCACu----CGGa-CGCGga--GCUCCugC- -5'
21392 5' -61.7 NC_004812.1 + 129017 0.67 0.5995
Target:  5'- cGGGcccgGGGCCgGCgGCCcCGGGGGCGg -3'
miRNA:   3'- cCCCca--CUCGGaCG-CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 3509 0.67 0.599501
Target:  5'- cGGGcccgGGGCCgGCgGCCcCGGGGGCGg -3'
miRNA:   3'- cCCCca--CUCGGaCG-CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 20598 0.67 0.600474
Target:  5'- cGGuGGcGAGgacgcgcgccugcgaCUGCGUCUCGGGGGCGg -3'
miRNA:   3'- cCC-CCaCUCg--------------GACGCGGAGCUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.