miRNA display CGI


Results 121 - 140 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 68586 0.67 0.638524
Target:  5'- cGGGGGacgccGCCgUGUGgUUCGAGGACc -3'
miRNA:   3'- -CCCCCacu--CGG-ACGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 43486 0.67 0.638524
Target:  5'- cGGGGGaacGAccGCCaGCGCCaucagCGAGGGgGg -3'
miRNA:   3'- -CCCCCa--CU--CGGaCGCGGa----GCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 91440 0.67 0.638524
Target:  5'- gGGGucGGUGAugcGCCgguggGCGUCcaCGAGGACGc -3'
miRNA:   3'- -CCC--CCACU---CGGa----CGCGGa-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 93554 0.67 0.638524
Target:  5'- uGGGGGcgGAGCCagacgccccCGCCUcccCGGGGGCc -3'
miRNA:   3'- -CCCCCa-CUCGGac-------GCGGA---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 148523 0.67 0.648285
Target:  5'- gGGGGGgcggcgcGGGCCgccggGCGCggCGGGGucGCGg -3'
miRNA:   3'- -CCCCCa------CUCGGa----CGCGgaGCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 117622 0.67 0.648285
Target:  5'- gGGGGGgcggcgcGGGCCgccggGCGCggCGGGGucGCGg -3'
miRNA:   3'- -CCCCCa------CUCGGa----CGCGgaGCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 142377 0.67 0.648285
Target:  5'- cGGGGUGGGaCCU-CGCaC-CGGGGAUa -3'
miRNA:   3'- cCCCCACUC-GGAcGCG-GaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 142362 0.66 0.654137
Target:  5'- uGGGaGGUGAucGCCgacaucacccggcGCGCCguggccgcCGGGGGCGg -3'
miRNA:   3'- -CCC-CCACU--CGGa------------CGCGGa-------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 30386 0.66 0.654137
Target:  5'- aGGGGcgGGGCCgGCGCCcgggcugccgcgcCGAGGAgGc -3'
miRNA:   3'- cCCCCa-CUCGGaCGCGGa------------GCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 155894 0.66 0.654137
Target:  5'- aGGGGcgGGGCCgGCGCCcgggcugccgcgcCGAGGAgGc -3'
miRNA:   3'- cCCCCa-CUCGGaCGCGGa------------GCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 2286 0.66 0.658035
Target:  5'- cGGGGGUcucggGGGUCUcggGgGUCUCcgcgGAGGACGg -3'
miRNA:   3'- -CCCCCA-----CUCGGA---CgCGGAG----CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 134686 0.66 0.658035
Target:  5'- aGGGGGgcgGAGCCgccgaGcCGCCggcugcgCGAaccgGGACGu -3'
miRNA:   3'- -CCCCCa--CUCGGa----C-GCGGa------GCU----CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 33187 0.66 0.658035
Target:  5'- cGGGGGUcucggGGGUCUcggGgGUCUCcgcgGAGGACGg -3'
miRNA:   3'- -CCCCCA-----CUCGGA---CgCGGAG----CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 141728 0.66 0.658035
Target:  5'- cGGGGUGGGgugcaCCUGCacccaGCCgUCGucGGGCGg -3'
miRNA:   3'- cCCCCACUC-----GGACG-----CGG-AGCu-CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 136473 0.66 0.658035
Target:  5'- cGGGGGcgccaUGGGCgacgcGgGCCUCGucuGGGCGg -3'
miRNA:   3'- -CCCCC-----ACUCGga---CgCGGAGCu--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 61293 0.66 0.658035
Target:  5'- uGGGGcGUGcgGGCC-GCGCUUCccuccgcGGGACGa -3'
miRNA:   3'- -CCCC-CAC--UCGGaCGCGGAGc------UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 105204 0.66 0.66193
Target:  5'- cGGGuGGUGggcgagcgcgccggcGGCCgGCGCCUCccacugcuGGGCGu -3'
miRNA:   3'- -CCC-CCAC---------------UCGGaCGCGGAGcu------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 72523 0.66 0.667766
Target:  5'- cGGGGUccGGGCCgGCGCC-CGcGG-CGa -3'
miRNA:   3'- cCCCCA--CUCGGaCGCGGaGCuCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 70868 0.66 0.667766
Target:  5'- gGGGGGcGuGgCUGCGCgggGGGGGCGg -3'
miRNA:   3'- -CCCCCaCuCgGACGCGgagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 45267 0.66 0.667766
Target:  5'- uGGGGGgcccgcgGGGUCgGCGCCgcCGcGGGCa -3'
miRNA:   3'- -CCCCCa------CUCGGaCGCGGa-GCuCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.