Results 101 - 120 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21392 | 5' | -61.7 | NC_004812.1 | + | 86007 | 0.68 | 0.541733 |
Target: 5'- uGGGGUGGGU--GUGCCggggCGuGGGCGg -3' miRNA: 3'- cCCCCACUCGgaCGCGGa---GCuCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 79459 | 0.69 | 0.532269 |
Target: 5'- gGGcGGGcUGccGGCCgagacgcgGCGCCUggcCGAGGACGc -3' miRNA: 3'- -CC-CCC-AC--UCGGa-------CGCGGA---GCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 32291 | 0.69 | 0.532269 |
Target: 5'- cGGGGccGUGAG-CUGCuCCUCGGGGGa- -3' miRNA: 3'- -CCCC--CACUCgGACGcGGAGCUCCUgc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 100083 | 0.69 | 0.522864 |
Target: 5'- cGGGGGccGGGCCgccggaGCGCCUuauaucCGcGGGCGg -3' miRNA: 3'- -CCCCCa-CUCGGa-----CGCGGA------GCuCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 104780 | 0.69 | 0.513524 |
Target: 5'- cGGGGGguccagGGGCCguaGgGCUggUGGGGGCGg -3' miRNA: 3'- -CCCCCa-----CUCGGa--CgCGGa-GCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 108468 | 0.69 | 0.504254 |
Target: 5'- --cGGc--GCC-GCGCCUCGAGGACGg -3' miRNA: 3'- cccCCacuCGGaCGCGGAGCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 123505 | 0.69 | 0.504254 |
Target: 5'- cGGGGGUcugGGGUCggGCGCCgggagcgcggCGGGGAgGa -3' miRNA: 3'- -CCCCCA---CUCGGa-CGCGGa---------GCUCCUgC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 91885 | 0.69 | 0.504254 |
Target: 5'- cGGGGGcGcgcauGCCcGCgGCCUCGGGGAa- -3' miRNA: 3'- -CCCCCaCu----CGGaCG-CGGAGCUCCUgc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 91891 | 0.69 | 0.504254 |
Target: 5'- uGGGGGUGAagcaGCCcgcggGgGCCcUGAGGGCc -3' miRNA: 3'- -CCCCCACU----CGGa----CgCGGaGCUCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 47466 | 0.69 | 0.504254 |
Target: 5'- -cGGGUGAGCCgcgucacccgccUGCuGCCUcagaagaucacCGGGGACGu -3' miRNA: 3'- ccCCCACUCGG------------ACG-CGGA-----------GCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 121778 | 0.69 | 0.501487 |
Target: 5'- cGGGGGcagcgagggccgcuUGGGCCcucGCGUggCGGGGGCGg -3' miRNA: 3'- -CCCCC--------------ACUCGGa--CGCGgaGCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 56257 | 0.69 | 0.495056 |
Target: 5'- cGGGGGcGcGCCccUGCGCCUCGcccGcGGCGg -3' miRNA: 3'- -CCCCCaCuCGG--ACGCGGAGCu--C-CUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 152680 | 0.69 | 0.494141 |
Target: 5'- cGGGGGcagcgagggcgcuUGGGCCcucGCGUggCGGGGGCGg -3' miRNA: 3'- -CCCCC-------------ACUCGGa--CGCGgaGCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 29804 | 0.69 | 0.485935 |
Target: 5'- cGGGGGUcGGcGCCc-CGCCUCcGGGGACc -3' miRNA: 3'- -CCCCCA-CU-CGGacGCGGAG-CUCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 49250 | 0.69 | 0.485935 |
Target: 5'- cGGGGGgcguccgGGGCCgacuccgGCGCCgucaaGAGcGGCGa -3' miRNA: 3'- -CCCCCa------CUCGGa------CGCGGag---CUC-CUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 155312 | 0.69 | 0.485935 |
Target: 5'- cGGGGGUcGGcGCCc-CGCCUCcGGGGACc -3' miRNA: 3'- -CCCCCA-CU-CGGacGCGGAG-CUCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 44196 | 0.69 | 0.485935 |
Target: 5'- cGGGGGUGGGgCUcgGCGgCggCGcGGACGg -3' miRNA: 3'- -CCCCCACUCgGA--CGCgGa-GCuCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 76837 | 0.7 | 0.476895 |
Target: 5'- cGGGGGcGcGCCUGCGCggCGucGGGCa -3' miRNA: 3'- -CCCCCaCuCGGACGCGgaGCu-CCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 100828 | 0.7 | 0.476895 |
Target: 5'- cGGGGGcgGGcGCCgcgaCGCCggggagggCGAGGACGg -3' miRNA: 3'- -CCCCCa-CU-CGGac--GCGGa-------GCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 101885 | 0.7 | 0.467939 |
Target: 5'- cGGGGGcGcGCCgggcuaggGCGCCcCGAGGcGCGg -3' miRNA: 3'- -CCCCCaCuCGGa-------CGCGGaGCUCC-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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