Results 121 - 140 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21392 | 5' | -61.7 | NC_004812.1 | + | 102899 | 0.7 | 0.450292 |
Target: 5'- cGGGGcGgcgGA-CCgGCGCCUCGggGGGGCGg -3' miRNA: 3'- -CCCC-Ca--CUcGGaCGCGGAGC--UCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 40148 | 0.7 | 0.441607 |
Target: 5'- cGGGGUG-GCCgGCGCCccccUCcgGGGGACa -3' miRNA: 3'- cCCCCACuCGGaCGCGG----AG--CUCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 13366 | 0.7 | 0.441607 |
Target: 5'- cGGGGGUGcggcGGUCccuuccGCGCCgggggUCGGGGGCGc -3' miRNA: 3'- -CCCCCAC----UCGGa-----CGCGG-----AGCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 83375 | 0.7 | 0.436442 |
Target: 5'- uGGGGGcGGGCCgcccGCccgacccgcagggcgGCCgCGAGGACGu -3' miRNA: 3'- -CCCCCaCUCGGa---CG---------------CGGaGCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 103504 | 0.7 | 0.433018 |
Target: 5'- -cGGGUGAGC--GCGCggaugCUCGGGGACGu -3' miRNA: 3'- ccCCCACUCGgaCGCG-----GAGCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 17157 | 0.7 | 0.433018 |
Target: 5'- cGGGGG-GAGUCgugGCGUCcgaGGGGACa -3' miRNA: 3'- -CCCCCaCUCGGa--CGCGGag-CUCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 68228 | 0.7 | 0.433017 |
Target: 5'- cGGGGGUGcgcgggGGCCgGgGCCUCGGccucGACGu -3' miRNA: 3'- -CCCCCAC------UCGGaCgCGGAGCUc---CUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 77944 | 0.7 | 0.433017 |
Target: 5'- cGGGGUGGGUCgGgGUggCGGGGGCGa -3' miRNA: 3'- cCCCCACUCGGaCgCGgaGCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 153097 | 0.7 | 0.424526 |
Target: 5'- uGGuGGGcGGGCUgucuggGCGCCgcccCGGGGGCGg -3' miRNA: 3'- -CC-CCCaCUCGGa-----CGCGGa---GCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 148577 | 0.7 | 0.424526 |
Target: 5'- gGGGGGUGccggcggaggccGGCCcGCGCCcccCGGGGucGCGg -3' miRNA: 3'- -CCCCCAC------------UCGGaCGCGGa--GCUCC--UGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 78952 | 0.7 | 0.424525 |
Target: 5'- cGGGGGUGcGCCgggggucgggggUGCGCCgggggUCGGGGguGCGc -3' miRNA: 3'- -CCCCCACuCGG------------ACGCGG-----AGCUCC--UGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 122196 | 0.7 | 0.424525 |
Target: 5'- uGGuGGGcGGGCUgucuggGCGCCgcccCGGGGGCGg -3' miRNA: 3'- -CC-CCCaCUCGGa-----CGCGGa---GCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 117676 | 0.7 | 0.424525 |
Target: 5'- gGGGGGUGccggcggaggccGGCCcGCGCCcccCGGGGucGCGg -3' miRNA: 3'- -CCCCCAC------------UCGGaCGCGGa--GCUCC--UGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 5978 | 0.7 | 0.422839 |
Target: 5'- gGGGGGcGAGUCgcggggugguagGCGCCg-GGGGGCGa -3' miRNA: 3'- -CCCCCaCUCGGa-----------CGCGGagCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 30522 | 0.71 | 0.416135 |
Target: 5'- cGGGGccggGGGCC-GCGCCgCG-GGACGg -3' miRNA: 3'- cCCCCa---CUCGGaCGCGGaGCuCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 29949 | 0.71 | 0.416135 |
Target: 5'- cGGGGGgccGGGCUcGCGCCgcCGGGGAg- -3' miRNA: 3'- -CCCCCa--CUCGGaCGCGGa-GCUCCUgc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 30821 | 0.71 | 0.416134 |
Target: 5'- gGGGGGgcagGGcggcGCCagGCGCCgccCGGGGGCGc -3' miRNA: 3'- -CCCCCa---CU----CGGa-CGCGGa--GCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 156030 | 0.71 | 0.416134 |
Target: 5'- cGGGGccggGGGCC-GCGCCgCG-GGACGg -3' miRNA: 3'- cCCCCa---CUCGGaCGCGGaGCuCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 34753 | 0.71 | 0.416134 |
Target: 5'- uGGGGcG-GCCccgGgGCCUCGGGGugGa -3' miRNA: 3'- cCCCCaCuCGGa--CgCGGAGCUCCugC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 155458 | 0.71 | 0.416134 |
Target: 5'- cGGGGGgccGGGCUcGCGCCgcCGGGGAg- -3' miRNA: 3'- -CCCCCa--CUCGGaCGCGGa-GCUCCUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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