miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 49250 0.69 0.485935
Target:  5'- cGGGGGgcguccgGGGCCgacuccgGCGCCgucaaGAGcGGCGa -3'
miRNA:   3'- -CCCCCa------CUCGGa------CGCGGag---CUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 49566 0.68 0.560824
Target:  5'- uGGGGG-GGGCCUcCGCgUCGAacucGGCGg -3'
miRNA:   3'- -CCCCCaCUCGGAcGCGgAGCUc---CUGC- -5'
21392 5' -61.7 NC_004812.1 + 50276 0.68 0.551254
Target:  5'- cGGGcgcgaaccGGcGGGUCUGCGCgggggCGAGGACGa -3'
miRNA:   3'- -CCC--------CCaCUCGGACGCGga---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 53757 0.66 0.667766
Target:  5'- uGGGGGUggucagGAGgUUGCGCgUCGccGGCGu -3'
miRNA:   3'- -CCCCCA------CUCgGACGCGgAGCucCUGC- -5'
21392 5' -61.7 NC_004812.1 + 54546 0.67 0.598528
Target:  5'- cGGGGGcGGcgacuccgacggcGCCgggGCGCCgCGGGaGACGg -3'
miRNA:   3'- -CCCCCaCU-------------CGGa--CGCGGaGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 56257 0.69 0.495056
Target:  5'- cGGGGGcGcGCCccUGCGCCUCGcccGcGGCGg -3'
miRNA:   3'- -CCCCCaCuCGG--ACGCGGAGCu--C-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 59525 0.66 0.696771
Target:  5'- aGGGGGcgGuAGCCgagGCGC-UCG-GGACc -3'
miRNA:   3'- -CCCCCa-C-UCGGa--CGCGgAGCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 59625 0.66 0.687141
Target:  5'- cGGGGGUGgcGGCCccGCaGCCgcaUGAGGGUGg -3'
miRNA:   3'- -CCCCCAC--UCGGa-CG-CGGa--GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 59627 0.68 0.580095
Target:  5'- uGGGGGUGGGgCgggaGCgGCCgcgGGGGAUGa -3'
miRNA:   3'- -CCCCCACUCgGa---CG-CGGag-CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 61293 0.66 0.658035
Target:  5'- uGGGGcGUGcgGGCC-GCGCUUCccuccgcGGGACGa -3'
miRNA:   3'- -CCCC-CAC--UCGGaCGCGGAGc------UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 63145 0.75 0.242009
Target:  5'- cGGGGGaggggGAGCCgccGCGgccuCCUCGGGGACc -3'
miRNA:   3'- -CCCCCa----CUCGGa--CGC----GGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 64205 0.66 0.706351
Target:  5'- gGGGGGUGucgggcggcccGGCCggcacGCGCUuUCGAuucggagcGGGCGg -3'
miRNA:   3'- -CCCCCAC-----------UCGGa----CGCGG-AGCU--------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 67199 0.68 0.589784
Target:  5'- cGGGGGUGA-CCgcggcggcgGCGCC-CGcGGGCu -3'
miRNA:   3'- -CCCCCACUcGGa--------CGCGGaGCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 68228 0.7 0.433017
Target:  5'- cGGGGGUGcgcgggGGCCgGgGCCUCGGccucGACGu -3'
miRNA:   3'- -CCCCCAC------UCGGaCgCGGAGCUc---CUGC- -5'
21392 5' -61.7 NC_004812.1 + 68586 0.67 0.638524
Target:  5'- cGGGGGacgccGCCgUGUGgUUCGAGGACc -3'
miRNA:   3'- -CCCCCacu--CGG-ACGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 69959 0.68 0.580095
Target:  5'- aGGGG-GGGUCUGUGgC-CGGGGGCu -3'
miRNA:   3'- cCCCCaCUCGGACGCgGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 70868 0.66 0.667766
Target:  5'- gGGGGGcGuGgCUGCGCgggGGGGGCGg -3'
miRNA:   3'- -CCCCCaCuCgGACGCGgagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 71907 0.66 0.67747
Target:  5'- cGGGcGGcgcgGcGCCgcggGCGCUgcagcggCGAGGACGg -3'
miRNA:   3'- -CCC-CCa---CuCGGa---CGCGGa------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 72046 0.68 0.551253
Target:  5'- gGGGGGgcgggGGGUCggggGCGCU--GGGGGCGg -3'
miRNA:   3'- -CCCCCa----CUCGGa---CGCGGagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 72481 0.75 0.242009
Target:  5'- aGGGGGgcGGCg-GCGCCUCGGGGuCGg -3'
miRNA:   3'- -CCCCCacUCGgaCGCGGAGCUCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.