miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 72523 0.66 0.667766
Target:  5'- cGGGGUccGGGCCgGCGCC-CGcGG-CGa -3'
miRNA:   3'- cCCCCA--CUCGGaCGCGGaGCuCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 74719 0.67 0.60924
Target:  5'- -cGGGUGcuGGCCUGgGCC-CG-GGACu -3'
miRNA:   3'- ccCCCAC--UCGGACgCGGaGCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 76837 0.7 0.476895
Target:  5'- cGGGGGcGcGCCUGCGCggCGucGGGCa -3'
miRNA:   3'- -CCCCCaCuCGGACGCGgaGCu-CCUGc -5'
21392 5' -61.7 NC_004812.1 + 77240 0.75 0.247639
Target:  5'- cGGGGGUGuggGGCgCUGC-CCUCGcgGGGGCGc -3'
miRNA:   3'- -CCCCCAC---UCG-GACGcGGAGC--UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 77740 0.68 0.559865
Target:  5'- aGGGGGUGggggcGGCCUccgcccuccccggGCuCCUCGgGGGACa -3'
miRNA:   3'- -CCCCCAC-----UCGGA-------------CGcGGAGC-UCCUGc -5'
21392 5' -61.7 NC_004812.1 + 77944 0.7 0.433017
Target:  5'- cGGGGUGGGUCgGgGUggCGGGGGCGa -3'
miRNA:   3'- cCCCCACUCGGaCgCGgaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 78340 0.68 0.555076
Target:  5'- cGGGccuccuggaccuaacGGUGAGCCUGCuCCcgCGaAGGACc -3'
miRNA:   3'- -CCC---------------CCACUCGGACGcGGa-GC-UCCUGc -5'
21392 5' -61.7 NC_004812.1 + 78952 0.7 0.424525
Target:  5'- cGGGGGUGcGCCgggggucgggggUGCGCCgggggUCGGGGguGCGc -3'
miRNA:   3'- -CCCCCACuCGG------------ACGCGG-----AGCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 79341 0.71 0.383609
Target:  5'- cGGGGGcGGGCagcgccagcgGCGCCcccgCGAGGGCa -3'
miRNA:   3'- -CCCCCaCUCGga--------CGCGGa---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 79445 0.68 0.589784
Target:  5'- uGGGGUGGcGCCUuccGCGCggcggCGGGGGCc -3'
miRNA:   3'- cCCCCACU-CGGA---CGCGga---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 79459 0.69 0.532269
Target:  5'- gGGcGGGcUGccGGCCgagacgcgGCGCCUggcCGAGGACGc -3'
miRNA:   3'- -CC-CCC-AC--UCGGa-------CGCGGA---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 79754 0.66 0.667766
Target:  5'- gGGGGGUGGacguGCCUGCccgacGCCgCGcAGGcCGc -3'
miRNA:   3'- -CCCCCACU----CGGACG-----CGGaGC-UCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 80384 0.72 0.367992
Target:  5'- aGGGGGaguucggGGGCCUGCuGCacgcCGAGGGCu -3'
miRNA:   3'- -CCCCCa------CUCGGACG-CGga--GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 81588 0.66 0.70635
Target:  5'- aGGGGGUcGGCUcGgGCgaCGAGGuCGg -3'
miRNA:   3'- -CCCCCAcUCGGaCgCGgaGCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 82845 0.67 0.5995
Target:  5'- cGGGGGUGcgcgcGCCgaGCGCggggUGAGGugGu -3'
miRNA:   3'- -CCCCCACu----CGGa-CGCGga--GCUCCugC- -5'
21392 5' -61.7 NC_004812.1 + 83375 0.7 0.436442
Target:  5'- uGGGGGcGGGCCgcccGCccgacccgcagggcgGCCgCGAGGACGu -3'
miRNA:   3'- -CCCCCaCUCGGa---CG---------------CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 84637 0.67 0.60924
Target:  5'- cGGGGcgcGUGAGCCUcccgcggcGCGCgUCGcggcAGGGCc -3'
miRNA:   3'- -CCCC---CACUCGGA--------CGCGgAGC----UCCUGc -5'
21392 5' -61.7 NC_004812.1 + 86007 0.68 0.541733
Target:  5'- uGGGGUGGGU--GUGCCggggCGuGGGCGg -3'
miRNA:   3'- cCCCCACUCGgaCGCGGa---GCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 91440 0.67 0.638524
Target:  5'- gGGGucGGUGAugcGCCgguggGCGUCcaCGAGGACGc -3'
miRNA:   3'- -CCC--CCACU---CGGa----CGCGGa-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 91885 0.69 0.504254
Target:  5'- cGGGGGcGcgcauGCCcGCgGCCUCGGGGAa- -3'
miRNA:   3'- -CCCCCaCu----CGGaCG-CGGAGCUCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.