miRNA display CGI


Results 101 - 120 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 91891 0.69 0.504254
Target:  5'- uGGGGGUGAagcaGCCcgcggGgGCCcUGAGGGCc -3'
miRNA:   3'- -CCCCCACU----CGGa----CgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 93554 0.67 0.638524
Target:  5'- uGGGGGcgGAGCCagacgccccCGCCUcccCGGGGGCc -3'
miRNA:   3'- -CCCCCa-CUCGGac-------GCGGA---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 98065 0.71 0.391581
Target:  5'- cGGGGGcggccgGAGCC-GgGCCccgggcuaUCGGGGGCGg -3'
miRNA:   3'- -CCCCCa-----CUCGGaCgCGG--------AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 98671 0.73 0.312721
Target:  5'- cGGGGGUcGAGCCgggGCgggcgcggucgaaccGCCgcgcCGGGGGCGg -3'
miRNA:   3'- -CCCCCA-CUCGGa--CG---------------CGGa---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 99319 0.66 0.696771
Target:  5'- aGGGGUGAGaUUUGUaa-UCGGGGGCGa -3'
miRNA:   3'- cCCCCACUC-GGACGcggAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 99967 0.68 0.570439
Target:  5'- --cGGUGGGCC-GUGCCggCGGGGGCc -3'
miRNA:   3'- cccCCACUCGGaCGCGGa-GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 100083 0.69 0.522864
Target:  5'- cGGGGGccGGGCCgccggaGCGCCUuauaucCGcGGGCGg -3'
miRNA:   3'- -CCCCCa-CUCGGa-----CGCGGA------GCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 100171 0.67 0.618994
Target:  5'- aGGGGGcGAcgaucGCCcgGCGCCUgGcGGACc -3'
miRNA:   3'- -CCCCCaCU-----CGGa-CGCGGAgCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 100828 0.7 0.476895
Target:  5'- cGGGGGcgGGcGCCgcgaCGCCggggagggCGAGGACGg -3'
miRNA:   3'- -CCCCCa-CU-CGGac--GCGGa-------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 101885 0.7 0.467939
Target:  5'- cGGGGGcGcGCCgggcuaggGCGCCcCGAGGcGCGg -3'
miRNA:   3'- -CCCCCaCuCGGa-------CGCGGaGCUCC-UGC- -5'
21392 5' -61.7 NC_004812.1 + 102177 0.67 0.61997
Target:  5'- cGGGGGcccgcggcGGGCCcaucgacacccggcgGCGUCUgGAGGACa -3'
miRNA:   3'- -CCCCCa-------CUCGGa--------------CGCGGAgCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 102899 0.7 0.450292
Target:  5'- cGGGGcGgcgGA-CCgGCGCCUCGggGGGGCGg -3'
miRNA:   3'- -CCCC-Ca--CUcGGaCGCGGAGC--UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 103504 0.7 0.433018
Target:  5'- -cGGGUGAGC--GCGCggaugCUCGGGGACGu -3'
miRNA:   3'- ccCCCACUCGgaCGCG-----GAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 103981 0.66 0.687141
Target:  5'- gGGGGGcUGcGGCauaauCUGCGCCUggcUGAGG-CGg -3'
miRNA:   3'- -CCCCC-AC-UCG-----GACGCGGA---GCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 104780 0.69 0.513524
Target:  5'- cGGGGGguccagGGGCCguaGgGCUggUGGGGGCGg -3'
miRNA:   3'- -CCCCCa-----CUCGGa--CgCGGa-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 105204 0.66 0.66193
Target:  5'- cGGGuGGUGggcgagcgcgccggcGGCCgGCGCCUCccacugcuGGGCGu -3'
miRNA:   3'- -CCC-CCAC---------------UCGGaCGCGGAGcu------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 105811 0.74 0.273702
Target:  5'- uGGGGGUGggggcuccGGCCggcggcgGCgcgggguucaucucgGCCUCGGGGACGu -3'
miRNA:   3'- -CCCCCAC--------UCGGa------CG---------------CGGAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 106080 0.66 0.70635
Target:  5'- -uGGGUGucgcGGCCUGCGCCUCcucuguccgacuGAGucucgcgaaccGACGg -3'
miRNA:   3'- ccCCCAC----UCGGACGCGGAG------------CUC-----------CUGC- -5'
21392 5' -61.7 NC_004812.1 + 107850 0.66 0.70635
Target:  5'- cGGaGGcGGGgCUcCGCCUcCGAGGGCGg -3'
miRNA:   3'- cCC-CCaCUCgGAcGCGGA-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 107910 0.72 0.345396
Target:  5'- cGGGGGUGcgucccccAGCCacagaGCGCCcCGAGGAgGc -3'
miRNA:   3'- -CCCCCAC--------UCGGa----CGCGGaGCUCCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.