miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 123255 0.67 0.609239
Target:  5'- aGGGcGUccucGGCCgGCGCCuaUCGGGGAUGa -3'
miRNA:   3'- cCCC-CAc---UCGGaCGCGG--AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 122418 0.66 0.667766
Target:  5'- cGGGuggacgcgcGGUGGGCCcggGCGgcgucuCCUCGGGcGGCGg -3'
miRNA:   3'- -CCC---------CCACUCGGa--CGC------GGAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 122196 0.7 0.424525
Target:  5'- uGGuGGGcGGGCUgucuggGCGCCgcccCGGGGGCGg -3'
miRNA:   3'- -CC-CCCaCUCGGa-----CGCGGa---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 122109 0.71 0.375746
Target:  5'- -uGGGUcaGGGCCUGgGCCagggccugggCGAGGACGg -3'
miRNA:   3'- ccCCCA--CUCGGACgCGGa---------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 121984 0.67 0.618994
Target:  5'- uGGGcUGGGCCUgaGCGCCgggCG-GGACu -3'
miRNA:   3'- cCCCcACUCGGA--CGCGGa--GCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 121917 0.66 0.70635
Target:  5'- cGGGccugaGGUcGGGCCUgaGCGCCgggGGGGACu -3'
miRNA:   3'- -CCC-----CCA-CUCGGA--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 121778 0.69 0.501487
Target:  5'- cGGGGGcagcgagggccgcuUGGGCCcucGCGUggCGGGGGCGg -3'
miRNA:   3'- -CCCCC--------------ACUCGGa--CGCGgaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 121494 0.72 0.330895
Target:  5'- gGGGaGGUagcgcgugGGGCCggGCGCCgCGGGGGCGc -3'
miRNA:   3'- -CCC-CCA--------CUCGGa-CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 120370 0.66 0.69581
Target:  5'- cGGGGGcGcgcGGCCggggGCGCgUacgcgggcgaccgCGAGGGCGa -3'
miRNA:   3'- -CCCCCaC---UCGGa---CGCGgA-------------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 117676 0.7 0.424525
Target:  5'- gGGGGGUGccggcggaggccGGCCcGCGCCcccCGGGGucGCGg -3'
miRNA:   3'- -CCCCCAC------------UCGGaCGCGGa--GCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 117622 0.67 0.648285
Target:  5'- gGGGGGgcggcgcGGGCCgccggGCGCggCGGGGucGCGg -3'
miRNA:   3'- -CCCCCa------CUCGGa----CGCGgaGCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 116401 0.72 0.358077
Target:  5'- cGGGcGGUcgccgauccgcugcGGGCCcGCGCCcUGGGGACGg -3'
miRNA:   3'- -CCC-CCA--------------CUCGGaCGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 115193 0.71 0.383609
Target:  5'- cGGGG-GGGCCggGaaaGCCgCGAGGGCGa -3'
miRNA:   3'- cCCCCaCUCGGa-Cg--CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 114757 0.66 0.667766
Target:  5'- cGGGG-GAGg-UGCGCUguaCGAGGGCGa -3'
miRNA:   3'- cCCCCaCUCggACGCGGa--GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 109601 0.71 0.375746
Target:  5'- -cGGGUG-GCCaugGCGCCcCGGGGGCa -3'
miRNA:   3'- ccCCCACuCGGa--CGCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 108468 0.69 0.504254
Target:  5'- --cGGc--GCC-GCGCCUCGAGGACGg -3'
miRNA:   3'- cccCCacuCGGaCGCGGAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 107910 0.72 0.345396
Target:  5'- cGGGGGUGcgucccccAGCCacagaGCGCCcCGAGGAgGc -3'
miRNA:   3'- -CCCCCAC--------UCGGa----CGCGGaGCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 107850 0.66 0.70635
Target:  5'- cGGaGGcGGGgCUcCGCCUcCGAGGGCGg -3'
miRNA:   3'- cCC-CCaCUCgGAcGCGGA-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 106080 0.66 0.70635
Target:  5'- -uGGGUGucgcGGCCUGCGCCUCcucuguccgacuGAGucucgcgaaccGACGg -3'
miRNA:   3'- ccCCCAC----UCGGACGCGGAG------------CUC-----------CUGC- -5'
21392 5' -61.7 NC_004812.1 + 105811 0.74 0.273702
Target:  5'- uGGGGGUGggggcuccGGCCggcggcgGCgcgggguucaucucgGCCUCGGGGACGu -3'
miRNA:   3'- -CCCCCAC--------UCGGa------CG---------------CGGAGCUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.