Results 81 - 100 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21392 | 5' | -61.7 | NC_004812.1 | + | 83375 | 0.7 | 0.436442 |
Target: 5'- uGGGGGcGGGCCgcccGCccgacccgcagggcgGCCgCGAGGACGu -3' miRNA: 3'- -CCCCCaCUCGGa---CG---------------CGGaGCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 82845 | 0.67 | 0.5995 |
Target: 5'- cGGGGGUGcgcgcGCCgaGCGCggggUGAGGugGu -3' miRNA: 3'- -CCCCCACu----CGGa-CGCGga--GCUCCugC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 81588 | 0.66 | 0.70635 |
Target: 5'- aGGGGGUcGGCUcGgGCgaCGAGGuCGg -3' miRNA: 3'- -CCCCCAcUCGGaCgCGgaGCUCCuGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 80384 | 0.72 | 0.367992 |
Target: 5'- aGGGGGaguucggGGGCCUGCuGCacgcCGAGGGCu -3' miRNA: 3'- -CCCCCa------CUCGGACG-CGga--GCUCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 79754 | 0.66 | 0.667766 |
Target: 5'- gGGGGGUGGacguGCCUGCccgacGCCgCGcAGGcCGc -3' miRNA: 3'- -CCCCCACU----CGGACG-----CGGaGC-UCCuGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 79459 | 0.69 | 0.532269 |
Target: 5'- gGGcGGGcUGccGGCCgagacgcgGCGCCUggcCGAGGACGc -3' miRNA: 3'- -CC-CCC-AC--UCGGa-------CGCGGA---GCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 79445 | 0.68 | 0.589784 |
Target: 5'- uGGGGUGGcGCCUuccGCGCggcggCGGGGGCc -3' miRNA: 3'- cCCCCACU-CGGA---CGCGga---GCUCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 79341 | 0.71 | 0.383609 |
Target: 5'- cGGGGGcGGGCagcgccagcgGCGCCcccgCGAGGGCa -3' miRNA: 3'- -CCCCCaCUCGga--------CGCGGa---GCUCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 78952 | 0.7 | 0.424525 |
Target: 5'- cGGGGGUGcGCCgggggucgggggUGCGCCgggggUCGGGGguGCGc -3' miRNA: 3'- -CCCCCACuCGG------------ACGCGG-----AGCUCC--UGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 78340 | 0.68 | 0.555076 |
Target: 5'- cGGGccuccuggaccuaacGGUGAGCCUGCuCCcgCGaAGGACc -3' miRNA: 3'- -CCC---------------CCACUCGGACGcGGa-GC-UCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 77944 | 0.7 | 0.433017 |
Target: 5'- cGGGGUGGGUCgGgGUggCGGGGGCGa -3' miRNA: 3'- cCCCCACUCGGaCgCGgaGCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 77740 | 0.68 | 0.559865 |
Target: 5'- aGGGGGUGggggcGGCCUccgcccuccccggGCuCCUCGgGGGACa -3' miRNA: 3'- -CCCCCAC-----UCGGA-------------CGcGGAGC-UCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 77240 | 0.75 | 0.247639 |
Target: 5'- cGGGGGUGuggGGCgCUGC-CCUCGcgGGGGCGc -3' miRNA: 3'- -CCCCCAC---UCG-GACGcGGAGC--UCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 76837 | 0.7 | 0.476895 |
Target: 5'- cGGGGGcGcGCCUGCGCggCGucGGGCa -3' miRNA: 3'- -CCCCCaCuCGGACGCGgaGCu-CCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 74719 | 0.67 | 0.60924 |
Target: 5'- -cGGGUGcuGGCCUGgGCC-CG-GGACu -3' miRNA: 3'- ccCCCAC--UCGGACgCGGaGCuCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 72523 | 0.66 | 0.667766 |
Target: 5'- cGGGGUccGGGCCgGCGCC-CGcGG-CGa -3' miRNA: 3'- cCCCCA--CUCGGaCGCGGaGCuCCuGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 72481 | 0.75 | 0.242009 |
Target: 5'- aGGGGGgcGGCg-GCGCCUCGGGGuCGg -3' miRNA: 3'- -CCCCCacUCGgaCGCGGAGCUCCuGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 72046 | 0.68 | 0.551253 |
Target: 5'- gGGGGGgcgggGGGUCggggGCGCU--GGGGGCGg -3' miRNA: 3'- -CCCCCa----CUCGGa---CGCGGagCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 71907 | 0.66 | 0.67747 |
Target: 5'- cGGGcGGcgcgGcGCCgcggGCGCUgcagcggCGAGGACGg -3' miRNA: 3'- -CCC-CCa---CuCGGa---CGCGGa------GCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 70868 | 0.66 | 0.667766 |
Target: 5'- gGGGGGcGuGgCUGCGCgggGGGGGCGg -3' miRNA: 3'- -CCCCCaCuCgGACGCGgagCUCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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