miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 107910 0.72 0.345396
Target:  5'- cGGGGGUGcgucccccAGCCacagaGCGCCcCGAGGAgGc -3'
miRNA:   3'- -CCCCCAC--------UCGGa----CGCGGaGCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 121494 0.72 0.330895
Target:  5'- gGGGaGGUagcgcgugGGGCCggGCGCCgCGGGGGCGc -3'
miRNA:   3'- -CCC-CCA--------CUCGGa-CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 98671 0.73 0.312721
Target:  5'- cGGGGGUcGAGCCgggGCgggcgcggucgaaccGCCgcgcCGGGGGCGg -3'
miRNA:   3'- -CCCCCA-CUCGGa--CG---------------CGGa---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 5599 0.73 0.290758
Target:  5'- gGGGGGgcggggucccccaggGGGCCggagGCGgCUCGGGGGCc -3'
miRNA:   3'- -CCCCCa--------------CUCGGa---CGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 135116 0.74 0.277422
Target:  5'- aGGGGGUGGGCCUggggugggGUGUUUgggGAGGACGa -3'
miRNA:   3'- -CCCCCACUCGGA--------CGCGGAg--CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 126940 0.71 0.39966
Target:  5'- cGGGGagGGGCCgGgGCCgCGAGGGCc -3'
miRNA:   3'- cCCCCa-CUCGGaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 6156 0.71 0.407845
Target:  5'- aGGGGGUcggGGGCCUGgGCggCGGGGGu- -3'
miRNA:   3'- -CCCCCA---CUCGGACgCGgaGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 76837 0.7 0.476895
Target:  5'- cGGGGGcGcGCCUGCGCggCGucGGGCa -3'
miRNA:   3'- -CCCCCaCuCGGACGCGgaGCu-CCUGc -5'
21392 5' -61.7 NC_004812.1 + 101885 0.7 0.467939
Target:  5'- cGGGGGcGcGCCgggcuaggGCGCCcCGAGGcGCGg -3'
miRNA:   3'- -CCCCCaCuCGGa-------CGCGGaGCUCC-UGC- -5'
21392 5' -61.7 NC_004812.1 + 102899 0.7 0.450292
Target:  5'- cGGGGcGgcgGA-CCgGCGCCUCGggGGGGCGg -3'
miRNA:   3'- -CCCC-Ca--CUcGGaCGCGGAGC--UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 68228 0.7 0.433017
Target:  5'- cGGGGGUGcgcgggGGCCgGgGCCUCGGccucGACGu -3'
miRNA:   3'- -CCCCCAC------UCGGaCgCGGAGCUc---CUGC- -5'
21392 5' -61.7 NC_004812.1 + 77944 0.7 0.433017
Target:  5'- cGGGGUGGGUCgGgGUggCGGGGGCGa -3'
miRNA:   3'- cCCCCACUCGGaCgCGgaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 78952 0.7 0.424525
Target:  5'- cGGGGGUGcGCCgggggucgggggUGCGCCgggggUCGGGGguGCGc -3'
miRNA:   3'- -CCCCCACuCGG------------ACGCGG-----AGCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 122196 0.7 0.424525
Target:  5'- uGGuGGGcGGGCUgucuggGCGCCgcccCGGGGGCGg -3'
miRNA:   3'- -CC-CCCaCUCGGa-----CGCGGa---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 117676 0.7 0.424525
Target:  5'- gGGGGGUGccggcggaggccGGCCcGCGCCcccCGGGGucGCGg -3'
miRNA:   3'- -CCCCCAC------------UCGGaCGCGGa--GCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 5978 0.7 0.422839
Target:  5'- gGGGGGcGAGUCgcggggugguagGCGCCg-GGGGGCGa -3'
miRNA:   3'- -CCCCCaCUCGGa-----------CGCGGagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 156030 0.71 0.416134
Target:  5'- cGGGGccggGGGCC-GCGCCgCG-GGACGg -3'
miRNA:   3'- cCCCCa---CUCGGaCGCGGaGCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 155458 0.71 0.416134
Target:  5'- cGGGGGgccGGGCUcGCGCCgcCGGGGAg- -3'
miRNA:   3'- -CCCCCa--CUCGGaCGCGGa-GCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 30821 0.71 0.416134
Target:  5'- gGGGGGgcagGGcggcGCCagGCGCCgccCGGGGGCGc -3'
miRNA:   3'- -CCCCCa---CU----CGGa-CGCGGa--GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 34753 0.71 0.416134
Target:  5'- uGGGGcG-GCCccgGgGCCUCGGGGugGa -3'
miRNA:   3'- cCCCCaCuCGGa--CgCGGAGCUCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.