miRNA display CGI


Results 81 - 100 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 78952 0.7 0.424525
Target:  5'- cGGGGGUGcGCCgggggucgggggUGCGCCgggggUCGGGGguGCGc -3'
miRNA:   3'- -CCCCCACuCGG------------ACGCGG-----AGCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 77944 0.7 0.433017
Target:  5'- cGGGGUGGGUCgGgGUggCGGGGGCGa -3'
miRNA:   3'- cCCCCACUCGGaCgCGgaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 68228 0.7 0.433017
Target:  5'- cGGGGGUGcgcgggGGCCgGgGCCUCGGccucGACGu -3'
miRNA:   3'- -CCCCCAC------UCGGaCgCGGAGCUc---CUGC- -5'
21392 5' -61.7 NC_004812.1 + 102899 0.7 0.450292
Target:  5'- cGGGGcGgcgGA-CCgGCGCCUCGggGGGGCGg -3'
miRNA:   3'- -CCCC-Ca--CUcGGaCGCGGAGC--UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 101885 0.7 0.467939
Target:  5'- cGGGGGcGcGCCgggcuaggGCGCCcCGAGGcGCGg -3'
miRNA:   3'- -CCCCCaCuCGGa-------CGCGGaGCUCC-UGC- -5'
21392 5' -61.7 NC_004812.1 + 76837 0.7 0.476895
Target:  5'- cGGGGGcGcGCCUGCGCggCGucGGGCa -3'
miRNA:   3'- -CCCCCaCuCGGACGCGgaGCu-CCUGc -5'
21392 5' -61.7 NC_004812.1 + 49250 0.69 0.485935
Target:  5'- cGGGGGgcguccgGGGCCgacuccgGCGCCgucaaGAGcGGCGa -3'
miRNA:   3'- -CCCCCa------CUCGGa------CGCGGag---CUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 155312 0.69 0.485935
Target:  5'- cGGGGGUcGGcGCCc-CGCCUCcGGGGACc -3'
miRNA:   3'- -CCCCCA-CU-CGGacGCGGAG-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 56257 0.69 0.495056
Target:  5'- cGGGGGcGcGCCccUGCGCCUCGcccGcGGCGg -3'
miRNA:   3'- -CCCCCaCuCGG--ACGCGGAGCu--C-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 80384 0.72 0.367992
Target:  5'- aGGGGGaguucggGGGCCUGCuGCacgcCGAGGGCu -3'
miRNA:   3'- -CCCCCa------CUCGGACG-CGga--GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 116401 0.72 0.358077
Target:  5'- cGGGcGGUcgccgauccgcugcGGGCCcGCGCCcUGGGGACGg -3'
miRNA:   3'- -CCC-CCA--------------CUCGGaCGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 124917 0.72 0.345397
Target:  5'- --cGGa-GGCCUGCGCCggCGAGGACGa -3'
miRNA:   3'- cccCCacUCGGACGCGGa-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 152395 0.72 0.330895
Target:  5'- gGGGaGGUagcgcgugGGGCCggGCGCCgCGGGGGCGc -3'
miRNA:   3'- -CCC-CCA--------CUCGGa-CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 36500 0.73 0.290758
Target:  5'- gGGGGGgcggggucccccaggGGGCCggagGCGgCUCGGGGGCc -3'
miRNA:   3'- -CCCCCa--------------CUCGGa---CGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 42335 0.74 0.283711
Target:  5'- cGGGGGUGuGUCgGCGCCgcgggucuUCG-GGGCGg -3'
miRNA:   3'- -CCCCCACuCGGaCGCGG--------AGCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 105811 0.74 0.273702
Target:  5'- uGGGGGUGggggcuccGGCCggcggcgGCgcgggguucaucucgGCCUCGGGGACGu -3'
miRNA:   3'- -CCCCCAC--------UCGGa------CG---------------CGGAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 77240 0.75 0.247639
Target:  5'- cGGGGGUGuggGGCgCUGC-CCUCGcgGGGGCGc -3'
miRNA:   3'- -CCCCCAC---UCG-GACGcGGAGC--UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 63145 0.75 0.242009
Target:  5'- cGGGGGaggggGAGCCgccGCGgccuCCUCGGGGACc -3'
miRNA:   3'- -CCCCCa----CUCGGa--CGC----GGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 13461 0.75 0.242009
Target:  5'- cGGGGGUGGGgggugGCGUCgCGGGGACGa -3'
miRNA:   3'- -CCCCCACUCgga--CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 152818 0.66 0.706351
Target:  5'- cGGGccugaGGUcGGGCCUgaGCGCCgggGGGGACu -3'
miRNA:   3'- -CCC-----CCA-CUCGGA--CGCGGag-CUCCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.