miRNA display CGI


Results 121 - 140 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 152395 0.72 0.330895
Target:  5'- gGGGaGGUagcgcgugGGGCCggGCGCCgCGGGGGCGc -3'
miRNA:   3'- -CCC-CCA--------CUCGGa-CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 36500 0.73 0.290758
Target:  5'- gGGGGGgcggggucccccaggGGGCCggagGCGgCUCGGGGGCc -3'
miRNA:   3'- -CCCCCa--------------CUCGGa---CGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 42335 0.74 0.283711
Target:  5'- cGGGGGUGuGUCgGCGCCgcgggucuUCG-GGGCGg -3'
miRNA:   3'- -CCCCCACuCGGaCGCGG--------AGCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 105811 0.74 0.273702
Target:  5'- uGGGGGUGggggcuccGGCCggcggcgGCgcgggguucaucucgGCCUCGGGGACGu -3'
miRNA:   3'- -CCCCCAC--------UCGGa------CG---------------CGGAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 77240 0.75 0.247639
Target:  5'- cGGGGGUGuggGGCgCUGC-CCUCGcgGGGGCGc -3'
miRNA:   3'- -CCCCCAC---UCG-GACGcGGAGC--UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 63145 0.75 0.242009
Target:  5'- cGGGGGaggggGAGCCgccGCGgccuCCUCGGGGACc -3'
miRNA:   3'- -CCCCCa----CUCGGa--CGC----GGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 13461 0.75 0.242009
Target:  5'- cGGGGGUGGGgggugGCGUCgCGGGGACGa -3'
miRNA:   3'- -CCCCCACUCgga--CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 17028 0.71 0.374965
Target:  5'- gGGGGGUGAagggGUCggcgggggGCGCCUCGGucccggccgccgcGGACGc -3'
miRNA:   3'- -CCCCCACU----CGGa-------CGCGGAGCU-------------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 153010 0.71 0.375746
Target:  5'- -uGGGUcaGGGCCUGgGCCagggccugggCGAGGACGg -3'
miRNA:   3'- ccCCCA--CUCGGACgCGGa---------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 17157 0.7 0.433018
Target:  5'- cGGGGG-GAGUCgugGCGUCcgaGGGGACa -3'
miRNA:   3'- -CCCCCaCUCGGa--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 153097 0.7 0.424526
Target:  5'- uGGuGGGcGGGCUgucuggGCGCCgcccCGGGGGCGg -3'
miRNA:   3'- -CC-CCCaCUCGGa-----CGCGGa---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 148577 0.7 0.424526
Target:  5'- gGGGGGUGccggcggaggccGGCCcGCGCCcccCGGGGucGCGg -3'
miRNA:   3'- -CCCCCAC------------UCGGaCGCGGa--GCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 30522 0.71 0.416135
Target:  5'- cGGGGccggGGGCC-GCGCCgCG-GGACGg -3'
miRNA:   3'- cCCCCa---CUCGGaCGCGGaGCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 29949 0.71 0.416135
Target:  5'- cGGGGGgccGGGCUcGCGCCgcCGGGGAg- -3'
miRNA:   3'- -CCCCCa--CUCGGaCGCGGa-GCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 145778 0.71 0.407846
Target:  5'- gGGGGGUGccggaagcagcGCgaGCGCCUCGGgcucgguguGGGCGg -3'
miRNA:   3'- -CCCCCACu----------CGgaCGCGGAGCU---------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 37057 0.71 0.407846
Target:  5'- aGGGGGUcggGGGCCUGgGCggCGGGGGu- -3'
miRNA:   3'- -CCCCCA---CUCGGACgCGgaGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 141810 0.71 0.399661
Target:  5'- cGGGGGUGccgcucGGCCaugGCGCgggucggCGGGGACGc -3'
miRNA:   3'- -CCCCCAC------UCGGa--CGCGga-----GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 1432 0.71 0.399661
Target:  5'- cGGGGagGGGCCgGgGCCgCGAGGGCc -3'
miRNA:   3'- cCCCCa-CUCGGaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 16805 0.71 0.391581
Target:  5'- cGGGGG-GAGUCUggaggacggGCGCCgCGGGGuCGg -3'
miRNA:   3'- -CCCCCaCUCGGA---------CGCGGaGCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 35892 0.71 0.383609
Target:  5'- -cGGG-GGGCCgUGCGCCgcagggcgggCGGGGGCGg -3'
miRNA:   3'- ccCCCaCUCGG-ACGCGGa---------GCUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.