miRNA display CGI


Results 141 - 160 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 63145 0.75 0.242009
Target:  5'- cGGGGGaggggGAGCCgccGCGgccuCCUCGGGGACc -3'
miRNA:   3'- -CCCCCa----CUCGGa--CGC----GGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 13461 0.75 0.242009
Target:  5'- cGGGGGUGGGgggugGCGUCgCGGGGACGa -3'
miRNA:   3'- -CCCCCACUCgga--CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 141810 0.71 0.399661
Target:  5'- cGGGGGUGccgcucGGCCaugGCGCgggucggCGGGGACGc -3'
miRNA:   3'- -CCCCCAC------UCGGa--CGCGga-----GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 37057 0.71 0.407846
Target:  5'- aGGGGGUcggGGGCCUGgGCggCGGGGGu- -3'
miRNA:   3'- -CCCCCA---CUCGGACgCGgaGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 108468 0.69 0.504254
Target:  5'- --cGGc--GCC-GCGCCUCGAGGACGg -3'
miRNA:   3'- cccCCacuCGGaCGCGGAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 91885 0.69 0.504254
Target:  5'- cGGGGGcGcgcauGCCcGCgGCCUCGGGGAa- -3'
miRNA:   3'- -CCCCCaCu----CGGaCG-CGGAGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 152680 0.69 0.494141
Target:  5'- cGGGGGcagcgagggcgcuUGGGCCcucGCGUggCGGGGGCGg -3'
miRNA:   3'- -CCCCC-------------ACUCGGa--CGCGgaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 44196 0.69 0.485935
Target:  5'- cGGGGGUGGGgCUcgGCGgCggCGcGGACGg -3'
miRNA:   3'- -CCCCCACUCgGA--CGCgGa-GCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 29804 0.69 0.485935
Target:  5'- cGGGGGUcGGcGCCc-CGCCUCcGGGGACc -3'
miRNA:   3'- -CCCCCA-CU-CGGacGCGGAG-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 100828 0.7 0.476895
Target:  5'- cGGGGGcgGGcGCCgcgaCGCCggggagggCGAGGACGg -3'
miRNA:   3'- -CCCCCa-CU-CGGac--GCGGa-------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 40148 0.7 0.441607
Target:  5'- cGGGGUG-GCCgGCGCCccccUCcgGGGGACa -3'
miRNA:   3'- cCCCCACuCGGaCGCGG----AG--CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 13366 0.7 0.441607
Target:  5'- cGGGGGUGcggcGGUCccuuccGCGCCgggggUCGGGGGCGc -3'
miRNA:   3'- -CCCCCAC----UCGGa-----CGCGG-----AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 83375 0.7 0.436442
Target:  5'- uGGGGGcGGGCCgcccGCccgacccgcagggcgGCCgCGAGGACGu -3'
miRNA:   3'- -CCCCCaCUCGGa---CG---------------CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 103504 0.7 0.433018
Target:  5'- -cGGGUGAGC--GCGCggaugCUCGGGGACGu -3'
miRNA:   3'- ccCCCACUCGgaCGCG-----GAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 17157 0.7 0.433018
Target:  5'- cGGGGG-GAGUCgugGCGUCcgaGGGGACa -3'
miRNA:   3'- -CCCCCaCUCGGa--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 153097 0.7 0.424526
Target:  5'- uGGuGGGcGGGCUgucuggGCGCCgcccCGGGGGCGg -3'
miRNA:   3'- -CC-CCCaCUCGGa-----CGCGGa---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 148577 0.7 0.424526
Target:  5'- gGGGGGUGccggcggaggccGGCCcGCGCCcccCGGGGucGCGg -3'
miRNA:   3'- -CCCCCAC------------UCGGaCGCGGa--GCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 30522 0.71 0.416135
Target:  5'- cGGGGccggGGGCC-GCGCCgCG-GGACGg -3'
miRNA:   3'- cCCCCa---CUCGGaCGCGGaGCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 29949 0.71 0.416135
Target:  5'- cGGGGGgccGGGCUcGCGCCgcCGGGGAg- -3'
miRNA:   3'- -CCCCCa--CUCGGaCGCGGa-GCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 145778 0.71 0.407846
Target:  5'- gGGGGGUGccggaagcagcGCgaGCGCCUCGGgcucgguguGGGCGg -3'
miRNA:   3'- -CCCCCACu----------CGgaCGCGGAGCU---------CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.