miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 123505 0.69 0.504254
Target:  5'- cGGGGGUcugGGGUCggGCGCCgggagcgcggCGGGGAgGa -3'
miRNA:   3'- -CCCCCA---CUCGGa-CGCGGa---------GCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 49566 0.68 0.560824
Target:  5'- uGGGGG-GGGCCUcCGCgUCGAacucGGCGg -3'
miRNA:   3'- -CCCCCaCUCGGAcGCGgAGCUc---CUGC- -5'
21392 5' -61.7 NC_004812.1 + 42335 0.74 0.283711
Target:  5'- cGGGGGUGuGUCgGCGCCgcgggucuUCG-GGGCGg -3'
miRNA:   3'- -CCCCCACuCGGaCGCGG--------AGCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 124917 0.72 0.345397
Target:  5'- --cGGa-GGCCUGCGCCggCGAGGACGa -3'
miRNA:   3'- cccCCacUCGGACGCGGa-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 17028 0.71 0.374965
Target:  5'- gGGGGGUGAagggGUCggcgggggGCGCCUCGGucccggccgccgcGGACGc -3'
miRNA:   3'- -CCCCCACU----CGGa-------CGCGGAGCU-------------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 16805 0.71 0.391581
Target:  5'- cGGGGG-GAGUCUggaggacggGCGCCgCGGGGuCGg -3'
miRNA:   3'- -CCCCCaCUCGGA---------CGCGGaGCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 29949 0.71 0.416135
Target:  5'- cGGGGGgccGGGCUcGCGCCgcCGGGGAg- -3'
miRNA:   3'- -CCCCCa--CUCGGaCGCGGa-GCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 153097 0.7 0.424526
Target:  5'- uGGuGGGcGGGCUgucuggGCGCCgcccCGGGGGCGg -3'
miRNA:   3'- -CC-CCCaCUCGGa-----CGCGGa---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 13366 0.7 0.441607
Target:  5'- cGGGGGUGcggcGGUCccuuccGCGCCgggggUCGGGGGCGc -3'
miRNA:   3'- -CCCCCAC----UCGGa-----CGCGG-----AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 29804 0.69 0.485935
Target:  5'- cGGGGGUcGGcGCCc-CGCCUCcGGGGACc -3'
miRNA:   3'- -CCCCCA-CU-CGGacGCGGAG-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 146969 0.66 0.677471
Target:  5'- cGGGGUGGGaguggGCGCUggggCGAGGgacuGCGg -3'
miRNA:   3'- cCCCCACUCgga--CGCGGa---GCUCC----UGC- -5'
21392 5' -61.7 NC_004812.1 + 29892 0.66 0.677471
Target:  5'- cGGGGGccGGGCC-GgGCCgggCGuGGugGc -3'
miRNA:   3'- -CCCCCa-CUCGGaCgCGGa--GCuCCugC- -5'
21392 5' -61.7 NC_004812.1 + 59627 0.68 0.580095
Target:  5'- uGGGGGUGGGgCgggaGCgGCCgcgGGGGAUGa -3'
miRNA:   3'- -CCCCCACUCgGa---CG-CGGag-CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 54546 0.67 0.598528
Target:  5'- cGGGGGcGGcgacuccgacggcGCCgggGCGCCgCGGGaGACGg -3'
miRNA:   3'- -CCCCCaCU-------------CGGa--CGCGGaGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 84637 0.67 0.60924
Target:  5'- cGGGGcgcGUGAGCCUcccgcggcGCGCgUCGcggcAGGGCc -3'
miRNA:   3'- -CCCC---CACUCGGA--------CGCGgAGC----UCCUGc -5'
21392 5' -61.7 NC_004812.1 + 100171 0.67 0.618994
Target:  5'- aGGGGGcGAcgaucGCCcgGCGCCUgGcGGACc -3'
miRNA:   3'- -CCCCCaCU-----CGGa-CGCGGAgCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 91440 0.67 0.638524
Target:  5'- gGGGucGGUGAugcGCCgguggGCGUCcaCGAGGACGc -3'
miRNA:   3'- -CCC--CCACU---CGGa----CGCGGa-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 30386 0.66 0.654137
Target:  5'- aGGGGcgGGGCCgGCGCCcgggcugccgcgcCGAGGAgGc -3'
miRNA:   3'- cCCCCa-CUCGGaCGCGGa------------GCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 141728 0.66 0.658035
Target:  5'- cGGGGUGGGgugcaCCUGCacccaGCCgUCGucGGGCGg -3'
miRNA:   3'- cCCCCACUC-----GGACG-----CGG-AGCu-CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 138681 0.66 0.667766
Target:  5'- aGGGGuGUGGGUUcGCGUaccccUUCGAGGAgCGa -3'
miRNA:   3'- -CCCC-CACUCGGaCGCG-----GAGCUCCU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.