miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 13366 0.7 0.441607
Target:  5'- cGGGGGUGcggcGGUCccuuccGCGCCgggggUCGGGGGCGc -3'
miRNA:   3'- -CCCCCAC----UCGGa-----CGCGG-----AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 136473 0.66 0.658035
Target:  5'- cGGGGGcgccaUGGGCgacgcGgGCCUCGucuGGGCGg -3'
miRNA:   3'- -CCCCC-----ACUCGga---CgCGGAGCu--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 30386 0.66 0.654137
Target:  5'- aGGGGcgGGGCCgGCGCCcgggcugccgcgcCGAGGAgGc -3'
miRNA:   3'- cCCCCa-CUCGGaCGCGGa------------GCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 36613 0.67 0.628758
Target:  5'- gGGGGGgcggGGGUCUGcCGCgggagGAGGGCGc -3'
miRNA:   3'- -CCCCCa---CUCGGAC-GCGgag--CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 141810 0.71 0.399661
Target:  5'- cGGGGGUGccgcucGGCCaugGCGCgggucggCGGGGACGc -3'
miRNA:   3'- -CCCCCAC------UCGGa--CGCGga-----GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 29949 0.71 0.416135
Target:  5'- cGGGGGgccGGGCUcGCGCCgcCGGGGAg- -3'
miRNA:   3'- -CCCCCa--CUCGGaCGCGGa-GCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 17157 0.7 0.433018
Target:  5'- cGGGGG-GAGUCgugGCGUCcgaGGGGACa -3'
miRNA:   3'- -CCCCCaCUCGGa--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 121984 0.67 0.618994
Target:  5'- uGGGcUGGGCCUgaGCGCCgggCG-GGACu -3'
miRNA:   3'- cCCCcACUCGGA--CGCGGa--GCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 102177 0.67 0.61997
Target:  5'- cGGGGGcccgcggcGGGCCcaucgacacccggcgGCGUCUgGAGGACa -3'
miRNA:   3'- -CCCCCa-------CUCGGa--------------CGCGGAgCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 5712 0.67 0.628758
Target:  5'- gGGGGGgcggGGGUCUGcCGCgggagGAGGGCGc -3'
miRNA:   3'- -CCCCCa---CUCGGAC-GCGgag--CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 15336 0.67 0.628758
Target:  5'- aGGGGGaagUGAcGCa-GCGCCUgGAGG-CGu -3'
miRNA:   3'- -CCCCC---ACU-CGgaCGCGGAgCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 101885 0.7 0.467939
Target:  5'- cGGGGGcGcGCCgggcuaggGCGCCcCGAGGcGCGg -3'
miRNA:   3'- -CCCCCaCuCGGa-------CGCGGaGCUCC-UGC- -5'
21392 5' -61.7 NC_004812.1 + 49250 0.69 0.485935
Target:  5'- cGGGGGgcguccgGGGCCgacuccgGCGCCgucaaGAGcGGCGa -3'
miRNA:   3'- -CCCCCa------CUCGGa------CGCGGag---CUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 155312 0.69 0.485935
Target:  5'- cGGGGGUcGGcGCCc-CGCCUCcGGGGACc -3'
miRNA:   3'- -CCCCCA-CU-CGGacGCGGAG-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 117622 0.67 0.648285
Target:  5'- gGGGGGgcggcgcGGGCCgccggGCGCggCGGGGucGCGg -3'
miRNA:   3'- -CCCCCa------CUCGGa----CGCGgaGCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 93554 0.67 0.638524
Target:  5'- uGGGGGcgGAGCCagacgccccCGCCUcccCGGGGGCc -3'
miRNA:   3'- -CCCCCa-CUCGGac-------GCGGA---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 68586 0.67 0.638524
Target:  5'- cGGGGGacgccGCCgUGUGgUUCGAGGACc -3'
miRNA:   3'- -CCCCCacu--CGG-ACGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 126940 0.71 0.39966
Target:  5'- cGGGGagGGGCCgGgGCCgCGAGGGCc -3'
miRNA:   3'- cCCCCa-CUCGGaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 98065 0.71 0.391581
Target:  5'- cGGGGGcggccgGAGCC-GgGCCccgggcuaUCGGGGGCGg -3'
miRNA:   3'- -CCCCCa-----CUCGGaCgCGG--------AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 15750 0.67 0.632664
Target:  5'- cGGGGGcc-GCCcGCGCCgUCagccgggcccugggcGAGGACGa -3'
miRNA:   3'- -CCCCCacuCGGaCGCGG-AG---------------CUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.