miRNA display CGI


Results 101 - 120 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 138001 0.67 0.609239
Target:  5'- gGGGGGgggGAGCggggGCGCCcCGuauacaaaagggGGGGCGa -3'
miRNA:   3'- -CCCCCa--CUCGga--CGCGGaGC------------UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 150633 0.67 0.609239
Target:  5'- cGGGGcGUGGGCC-GCauaaugagauCCUCGAcgGGGCGg -3'
miRNA:   3'- -CCCC-CACUCGGaCGc---------GGAGCU--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 7684 0.67 0.618994
Target:  5'- cGGGGGUGGGCggGCGCg--GGGGuCGc -3'
miRNA:   3'- -CCCCCACUCGgaCGCGgagCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 121984 0.67 0.618994
Target:  5'- uGGGcUGGGCCUgaGCGCCgggCG-GGACu -3'
miRNA:   3'- cCCCcACUCGGA--CGCGGa--GCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 117622 0.67 0.648285
Target:  5'- gGGGGGgcggcgcGGGCCgccggGCGCggCGGGGucGCGg -3'
miRNA:   3'- -CCCCCa------CUCGGa----CGCGgaGCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 93554 0.67 0.638524
Target:  5'- uGGGGGcgGAGCCagacgccccCGCCUcccCGGGGGCc -3'
miRNA:   3'- -CCCCCa-CUCGGac-------GCGGA---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 102177 0.67 0.61997
Target:  5'- cGGGGGcccgcggcGGGCCcaucgacacccggcgGCGUCUgGAGGACa -3'
miRNA:   3'- -CCCCCa-------CUCGGa--------------CGCGGAgCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 15750 0.67 0.632664
Target:  5'- cGGGGGcc-GCCcGCGCCgUCagccgggcccugggcGAGGACGa -3'
miRNA:   3'- -CCCCCacuCGGaCGCGG-AG---------------CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 82845 0.67 0.5995
Target:  5'- cGGGGGUGcgcgcGCCgaGCGCggggUGAGGugGu -3'
miRNA:   3'- -CCCCCACu----CGGa-CGCGga--GCUCCugC- -5'
21392 5' -61.7 NC_004812.1 + 79445 0.68 0.589784
Target:  5'- uGGGGUGGcGCCUuccGCGCggcggCGGGGGCc -3'
miRNA:   3'- cCCCCACU-CGGA---CGCGga---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 77944 0.7 0.433017
Target:  5'- cGGGGUGGGUCgGgGUggCGGGGGCGa -3'
miRNA:   3'- cCCCCACUCGGaCgCGgaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 68228 0.7 0.433017
Target:  5'- cGGGGGUGcgcgggGGCCgGgGCCUCGGccucGACGu -3'
miRNA:   3'- -CCCCCAC------UCGGaCgCGGAGCUc---CUGC- -5'
21392 5' -61.7 NC_004812.1 + 102899 0.7 0.450292
Target:  5'- cGGGGcGgcgGA-CCgGCGCCUCGggGGGGCGg -3'
miRNA:   3'- -CCCC-Ca--CUcGGaCGCGGAGC--UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 101885 0.7 0.467939
Target:  5'- cGGGGGcGcGCCgggcuaggGCGCCcCGAGGcGCGg -3'
miRNA:   3'- -CCCCCaCuCGGa-------CGCGGaGCUCC-UGC- -5'
21392 5' -61.7 NC_004812.1 + 76837 0.7 0.476895
Target:  5'- cGGGGGcGcGCCUGCGCggCGucGGGCa -3'
miRNA:   3'- -CCCCCaCuCGGACGCGgaGCu-CCUGc -5'
21392 5' -61.7 NC_004812.1 + 49250 0.69 0.485935
Target:  5'- cGGGGGgcguccgGGGCCgacuccgGCGCCgucaaGAGcGGCGa -3'
miRNA:   3'- -CCCCCa------CUCGGa------CGCGGag---CUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 155312 0.69 0.485935
Target:  5'- cGGGGGUcGGcGCCc-CGCCUCcGGGGACc -3'
miRNA:   3'- -CCCCCA-CU-CGGacGCGGAG-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 20289 0.68 0.580094
Target:  5'- cGGGGGUGGGCggcGCGCCggCGcAGcGCGc -3'
miRNA:   3'- -CCCCCACUCGga-CGCGGa-GC-UCcUGC- -5'
21392 5' -61.7 NC_004812.1 + 5712 0.67 0.628758
Target:  5'- gGGGGGgcggGGGUCUGcCGCgggagGAGGGCGc -3'
miRNA:   3'- -CCCCCa---CUCGGAC-GCGgag--CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 24503 0.68 0.580094
Target:  5'- -cGGG-GGGCCcccGCGCCgCGGGGGCu -3'
miRNA:   3'- ccCCCaCUCGGa--CGCGGaGCUCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.