miRNA display CGI


Results 121 - 140 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 15336 0.67 0.628758
Target:  5'- aGGGGGaagUGAcGCa-GCGCCUgGAGG-CGu -3'
miRNA:   3'- -CCCCC---ACU-CGgaCGCGGAgCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 15750 0.67 0.632664
Target:  5'- cGGGGGcc-GCCcGCGCCgUCagccgggcccugggcGAGGACGa -3'
miRNA:   3'- -CCCCCacuCGGaCGCGG-AG---------------CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 68586 0.67 0.638524
Target:  5'- cGGGGGacgccGCCgUGUGgUUCGAGGACc -3'
miRNA:   3'- -CCCCCacu--CGG-ACGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 93554 0.67 0.638524
Target:  5'- uGGGGGcgGAGCCagacgccccCGCCUcccCGGGGGCc -3'
miRNA:   3'- -CCCCCa-CUCGGac-------GCGGA---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 81588 0.66 0.70635
Target:  5'- aGGGGGUcGGCUcGgGCgaCGAGGuCGg -3'
miRNA:   3'- -CCCCCAcUCGGaCgCGgaGCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 106080 0.66 0.70635
Target:  5'- -uGGGUGucgcGGCCUGCGCCUCcucuguccgacuGAGucucgcgaaccGACGg -3'
miRNA:   3'- ccCCCAC----UCGGACGCGGAG------------CUC-----------CUGC- -5'
21392 5' -61.7 NC_004812.1 + 4295 0.68 0.551253
Target:  5'- cGGGGGacuGCCUGCcgguCCUCGAcauggagacGGGCGa -3'
miRNA:   3'- -CCCCCacuCGGACGc---GGAGCU---------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 72046 0.68 0.551253
Target:  5'- gGGGGGgcgggGGGUCggggGCGCU--GGGGGCGg -3'
miRNA:   3'- -CCCCCa----CUCGGa---CGCGGagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 77740 0.68 0.559865
Target:  5'- aGGGGGUGggggcGGCCUccgcccuccccggGCuCCUCGgGGGACa -3'
miRNA:   3'- -CCCCCAC-----UCGGA-------------CGcGGAGC-UCCUGc -5'
21392 5' -61.7 NC_004812.1 + 5825 0.68 0.570439
Target:  5'- cGGcGGGcucugcGGGCCggcgGCGCgCUCGGGaGGCGg -3'
miRNA:   3'- -CC-CCCa-----CUCGGa---CGCG-GAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 99967 0.68 0.570439
Target:  5'- --cGGUGGGCC-GUGCCggCGGGGGCc -3'
miRNA:   3'- cccCCACUCGGaCGCGGa-GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 140882 0.68 0.580094
Target:  5'- cGGGGGUGGGUg-GCGggaCgcgCGGGGGCa -3'
miRNA:   3'- -CCCCCACUCGgaCGCg--Ga--GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 24503 0.68 0.580094
Target:  5'- -cGGG-GGGCCcccGCGCCgCGGGGGCu -3'
miRNA:   3'- ccCCCaCUCGGa--CGCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 79445 0.68 0.589784
Target:  5'- uGGGGUGGcGCCUuccGCGCggcggCGGGGGCc -3'
miRNA:   3'- cCCCCACU-CGGA---CGCGga---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 82845 0.67 0.5995
Target:  5'- cGGGGGUGcgcgcGCCgaGCGCggggUGAGGugGu -3'
miRNA:   3'- -CCCCCACu----CGGa-CGCGga--GCUCCugC- -5'
21392 5' -61.7 NC_004812.1 + 129017 0.67 0.5995
Target:  5'- cGGGcccgGGGCCgGCgGCCcCGGGGGCGg -3'
miRNA:   3'- cCCCca--CUCGGaCG-CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 123255 0.67 0.609239
Target:  5'- aGGGcGUccucGGCCgGCGCCuaUCGGGGAUGa -3'
miRNA:   3'- cCCC-CAc---UCGGaCGCGG--AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 23939 0.66 0.710167
Target:  5'- gGGGagcacaucuagacgaGGUG-GCCaGCGaCCcCGAGGACGu -3'
miRNA:   3'- -CCC---------------CCACuCGGaCGC-GGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 107850 0.66 0.70635
Target:  5'- cGGaGGcGGGgCUcCGCCUcCGAGGGCGg -3'
miRNA:   3'- cCC-CCaCUCgGAcGCGGA-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 121917 0.66 0.70635
Target:  5'- cGGGccugaGGUcGGGCCUgaGCGCCgggGGGGACu -3'
miRNA:   3'- -CCC-----CCA-CUCGGA--CGCGGag-CUCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.