Results 41 - 60 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21392 | 5' | -61.7 | NC_004812.1 | + | 136473 | 0.66 | 0.658035 |
Target: 5'- cGGGGGcgccaUGGGCgacgcGgGCCUCGucuGGGCGg -3' miRNA: 3'- -CCCCC-----ACUCGga---CgCGGAGCu--CCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 141728 | 0.66 | 0.658035 |
Target: 5'- cGGGGUGGGgugcaCCUGCacccaGCCgUCGucGGGCGg -3' miRNA: 3'- cCCCCACUC-----GGACG-----CGG-AGCu-CCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 134686 | 0.66 | 0.658035 |
Target: 5'- aGGGGGgcgGAGCCgccgaGcCGCCggcugcgCGAaccgGGACGu -3' miRNA: 3'- -CCCCCa--CUCGGa----C-GCGGa------GCU----CCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 2286 | 0.66 | 0.658035 |
Target: 5'- cGGGGGUcucggGGGUCUcggGgGUCUCcgcgGAGGACGg -3' miRNA: 3'- -CCCCCA-----CUCGGA---CgCGGAG----CUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 61293 | 0.66 | 0.658035 |
Target: 5'- uGGGGcGUGcgGGCC-GCGCUUCccuccgcGGGACGa -3' miRNA: 3'- -CCCC-CAC--UCGGaCGCGGAGc------UCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 33187 | 0.66 | 0.658035 |
Target: 5'- cGGGGGUcucggGGGUCUcggGgGUCUCcgcgGAGGACGg -3' miRNA: 3'- -CCCCCA-----CUCGGA---CgCGGAG----CUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 30386 | 0.66 | 0.654137 |
Target: 5'- aGGGGcgGGGCCgGCGCCcgggcugccgcgcCGAGGAgGc -3' miRNA: 3'- cCCCCa-CUCGGaCGCGGa------------GCUCCUgC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 142362 | 0.66 | 0.654137 |
Target: 5'- uGGGaGGUGAucGCCgacaucacccggcGCGCCguggccgcCGGGGGCGg -3' miRNA: 3'- -CCC-CCACU--CGGa------------CGCGGa-------GCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 155894 | 0.66 | 0.654137 |
Target: 5'- aGGGGcgGGGCCgGCGCCcgggcugccgcgcCGAGGAgGc -3' miRNA: 3'- cCCCCa-CUCGGaCGCGGa------------GCUCCUgC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 148523 | 0.67 | 0.648285 |
Target: 5'- gGGGGGgcggcgcGGGCCgccggGCGCggCGGGGucGCGg -3' miRNA: 3'- -CCCCCa------CUCGGa----CGCGgaGCUCC--UGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 117622 | 0.67 | 0.648285 |
Target: 5'- gGGGGGgcggcgcGGGCCgccggGCGCggCGGGGucGCGg -3' miRNA: 3'- -CCCCCa------CUCGGa----CGCGgaGCUCC--UGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 142377 | 0.67 | 0.648285 |
Target: 5'- cGGGGUGGGaCCU-CGCaC-CGGGGAUa -3' miRNA: 3'- cCCCCACUC-GGAcGCG-GaGCUCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 91440 | 0.67 | 0.638524 |
Target: 5'- gGGGucGGUGAugcGCCgguggGCGUCcaCGAGGACGc -3' miRNA: 3'- -CCC--CCACU---CGGa----CGCGGa-GCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 43486 | 0.67 | 0.638524 |
Target: 5'- cGGGGGaacGAccGCCaGCGCCaucagCGAGGGgGg -3' miRNA: 3'- -CCCCCa--CU--CGGaCGCGGa----GCUCCUgC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 93554 | 0.67 | 0.638524 |
Target: 5'- uGGGGGcgGAGCCagacgccccCGCCUcccCGGGGGCc -3' miRNA: 3'- -CCCCCa-CUCGGac-------GCGGA---GCUCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 68586 | 0.67 | 0.638524 |
Target: 5'- cGGGGGacgccGCCgUGUGgUUCGAGGACc -3' miRNA: 3'- -CCCCCacu--CGG-ACGCgGAGCUCCUGc -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 15750 | 0.67 | 0.632664 |
Target: 5'- cGGGGGcc-GCCcGCGCCgUCagccgggcccugggcGAGGACGa -3' miRNA: 3'- -CCCCCacuCGGaCGCGG-AG---------------CUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 36613 | 0.67 | 0.628758 |
Target: 5'- gGGGGGgcggGGGUCUGcCGCgggagGAGGGCGc -3' miRNA: 3'- -CCCCCa---CUCGGAC-GCGgag--CUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 36893 | 0.67 | 0.628758 |
Target: 5'- cGGGGUG-GUagGCGCCg-GGGGGCGa -3' miRNA: 3'- cCCCCACuCGgaCGCGGagCUCCUGC- -5' |
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21392 | 5' | -61.7 | NC_004812.1 | + | 5712 | 0.67 | 0.628758 |
Target: 5'- gGGGGGgcggGGGUCUGcCGCgggagGAGGGCGc -3' miRNA: 3'- -CCCCCa---CUCGGAC-GCGgag--CUCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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