miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21393 3' -58.8 NC_004812.1 + 55007 0.66 0.771132
Target:  5'- aGUC-GGGGCGGCGCAgCucgacuUCUCCgcaCCGg -3'
miRNA:   3'- -UAGaCCUCGCUGCGUgGu-----AGAGG---GGC- -5'
21393 3' -58.8 NC_004812.1 + 9480 0.66 0.771132
Target:  5'- -gCUGcGAGCaGcACGC-CCGUCcCCCCGg -3'
miRNA:   3'- uaGAC-CUCG-C-UGCGuGGUAGaGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 97131 0.67 0.761832
Target:  5'- ---cGcGGCGGCGCGCC-UCUCCgCGg -3'
miRNA:   3'- uagaCcUCGCUGCGUGGuAGAGGgGC- -5'
21393 3' -58.8 NC_004812.1 + 138827 0.67 0.761832
Target:  5'- ---cGGAGgGAcgcCGCugCGUgUCCCCGc -3'
miRNA:   3'- uagaCCUCgCU---GCGugGUAgAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 142493 0.67 0.761832
Target:  5'- -gCUGGcGGCGuucACGCACgGcgcgCUCCCCGc -3'
miRNA:   3'- uaGACC-UCGC---UGCGUGgUa---GAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 5706 0.67 0.75242
Target:  5'- gGUCUccGGCGAgCGCGCCGacCUCCCCc -3'
miRNA:   3'- -UAGAccUCGCU-GCGUGGUa-GAGGGGc -5'
21393 3' -58.8 NC_004812.1 + 154969 0.67 0.75242
Target:  5'- ---gGGAGCGGCGCGUCAUCgaUCCgCCu -3'
miRNA:   3'- uagaCCUCGCUGCGUGGUAG--AGG-GGc -5'
21393 3' -58.8 NC_004812.1 + 14762 0.67 0.75242
Target:  5'- cUCcgGGGGCGACGacaCGCUcgCgUCCCCGc -3'
miRNA:   3'- uAGa-CCUCGCUGC---GUGGuaG-AGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 131214 0.67 0.75242
Target:  5'- gGUCUccGGCGAgCGCGCCGacCUCCCCc -3'
miRNA:   3'- -UAGAccUCGCU-GCGUGGUa-GAGGGGc -5'
21393 3' -58.8 NC_004812.1 + 108953 0.67 0.75242
Target:  5'- --gUGGAGCGGCGCAUCg---CCgCCGa -3'
miRNA:   3'- uagACCUCGCUGCGUGGuagaGG-GGC- -5'
21393 3' -58.8 NC_004812.1 + 124068 0.67 0.75242
Target:  5'- ---gGGAGCGGCGCGUCAUCgaUCCgCCu -3'
miRNA:   3'- uagaCCUCGCUGCGUGGUAG--AGG-GGc -5'
21393 3' -58.8 NC_004812.1 + 118271 0.67 0.75242
Target:  5'- -cCUGGAGaCGugGCagcGCCggCUCgCCCa -3'
miRNA:   3'- uaGACCUC-GCugCG---UGGuaGAG-GGGc -5'
21393 3' -58.8 NC_004812.1 + 144612 0.67 0.75242
Target:  5'- cGUCUGcGcuuuugacGGCGggacGCGCGCCAUCgcgUCCCGg -3'
miRNA:   3'- -UAGAC-C--------UCGC----UGCGUGGUAGa--GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 90639 0.67 0.75242
Target:  5'- -gCUGGuugacgAGCGAgCGCGCCAggUCCUCGu -3'
miRNA:   3'- uaGACC------UCGCU-GCGUGGUagAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 142115 0.67 0.75242
Target:  5'- uUCcGGAGgccucCGACGuCACCAUCcagggCCCCGc -3'
miRNA:   3'- uAGaCCUC-----GCUGC-GUGGUAGa----GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 1210 0.67 0.742906
Target:  5'- cUCggccgGGGGCGGCGcCGCgGgggcucCUCCCCGc -3'
miRNA:   3'- uAGa----CCUCGCUGC-GUGgUa-----GAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 32111 0.67 0.742906
Target:  5'- cUCggccgGGGGCGGCGcCGCgGgggcucCUCCCCGc -3'
miRNA:   3'- uAGa----CCUCGCUGC-GUGgUa-----GAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 99618 0.67 0.733298
Target:  5'- -gCUGGAGCuccucaGGCGCugCGaC-CCCCGg -3'
miRNA:   3'- uaGACCUCG------CUGCGugGUaGaGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 141092 0.67 0.733298
Target:  5'- ---cGGGGUcacgcACGCGCCA-CUCCCCGc -3'
miRNA:   3'- uagaCCUCGc----UGCGUGGUaGAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 98497 0.67 0.723605
Target:  5'- --gUGGGGCGGCGCggggcGCCGggUCCCgGg -3'
miRNA:   3'- uagACCUCGCUGCG-----UGGUagAGGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.