miRNA display CGI


Results 21 - 40 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21393 5' -60.9 NC_004812.1 + 4526 0.66 0.726211
Target:  5'- --aGGGCGcgcuGCUGG-GCGgCCGC-AGCu -3'
miRNA:   3'- gagCCCGCu---CGACCaCGU-GGCGcUCG- -5'
21393 5' -60.9 NC_004812.1 + 123302 0.66 0.726211
Target:  5'- -gCGGGgGGGacgGGUGUAggugagUCGCGGGCc -3'
miRNA:   3'- gaGCCCgCUCga-CCACGU------GGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 29791 0.66 0.726211
Target:  5'- gUCGGGC-AGCUGGUgGCAaacagacggcUCGCguacgacgaGAGCg -3'
miRNA:   3'- gAGCCCGcUCGACCA-CGU----------GGCG---------CUCG- -5'
21393 5' -60.9 NC_004812.1 + 32688 0.66 0.726211
Target:  5'- -cCGGGCcGGCccGGg--ACCGCGGGCg -3'
miRNA:   3'- gaGCCCGcUCGa-CCacgUGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 44171 0.66 0.726211
Target:  5'- gCUCGGGggcCGAGCcGGUcuGCGgCGgGGGUg -3'
miRNA:   3'- -GAGCCC---GCUCGaCCA--CGUgGCgCUCG- -5'
21393 5' -60.9 NC_004812.1 + 22304 0.66 0.726211
Target:  5'- cCUCuGGCGGGggGGccucgGCGCCG-GGGCu -3'
miRNA:   3'- -GAGcCCGCUCgaCCa----CGUGGCgCUCG- -5'
21393 5' -60.9 NC_004812.1 + 154203 0.66 0.726211
Target:  5'- -gCGGGgGGGacgGGUGUAggugagUCGCGGGCc -3'
miRNA:   3'- gaGCCCgCUCga-CCACGU------GGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 100881 0.66 0.726211
Target:  5'- --aGGGCGucccggaacGCggGGUGCGCCgagcGCGGGUg -3'
miRNA:   3'- gagCCCGCu--------CGa-CCACGUGG----CGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 46555 0.66 0.726211
Target:  5'- gUCGGGCccGAGCcccgGGU-CGCCGCGcaccGCc -3'
miRNA:   3'- gAGCCCG--CUCGa---CCAcGUGGCGCu---CG- -5'
21393 5' -60.9 NC_004812.1 + 107183 0.66 0.726211
Target:  5'- -cCGGGCGAGC-GGaGCgugGCgGuCGGGCg -3'
miRNA:   3'- gaGCCCGCUCGaCCaCG---UGgC-GCUCG- -5'
21393 5' -60.9 NC_004812.1 + 35427 0.66 0.726211
Target:  5'- --aGGGCGcgcuGCUGG-GCGgCCGC-AGCu -3'
miRNA:   3'- gagCCCGCu---CGACCaCGU-GGCGcUCG- -5'
21393 5' -60.9 NC_004812.1 + 4923 0.66 0.723352
Target:  5'- gCUCGcugcggcccgcggaGGCGGcGCUGGaggGCgGCCGgCGGGCg -3'
miRNA:   3'- -GAGC--------------CCGCU-CGACCa--CG-UGGC-GCUCG- -5'
21393 5' -60.9 NC_004812.1 + 12597 0.66 0.723352
Target:  5'- aUCcGGCGGGUgccgGGgacacacgaagacgcCGCCGCGAGCg -3'
miRNA:   3'- gAGcCCGCUCGa---CCac-------------GUGGCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 130431 0.66 0.723352
Target:  5'- gCUCGcugcggcccgcggaGGCGGcGCUGGaggGCgGCCGgCGGGCg -3'
miRNA:   3'- -GAGC--------------CCGCU-CGACCa--CG-UGGC-GCUCG- -5'
21393 5' -60.9 NC_004812.1 + 92116 0.66 0.717615
Target:  5'- cCUCGGGCGuGCUcugggggaugcgGGagcggaucugcuuccGCAUgGCGAGCc -3'
miRNA:   3'- -GAGCCCGCuCGA------------CCa--------------CGUGgCGCUCG- -5'
21393 5' -60.9 NC_004812.1 + 27668 0.66 0.716656
Target:  5'- -cCGcGGCG-GCUG--GCGCCGCGuGCc -3'
miRNA:   3'- gaGC-CCGCuCGACcaCGUGGCGCuCG- -5'
21393 5' -60.9 NC_004812.1 + 153176 0.66 0.716656
Target:  5'- -cCGcGGCG-GCUG--GCGCCGCGuGCc -3'
miRNA:   3'- gaGC-CCGCuCGACcaCGUGGCGCuCG- -5'
21393 5' -60.9 NC_004812.1 + 139074 0.66 0.716656
Target:  5'- aCUCGaGGCuGGCccugGGuUGCACgGgGAGCc -3'
miRNA:   3'- -GAGC-CCGcUCGa---CC-ACGUGgCgCUCG- -5'
21393 5' -60.9 NC_004812.1 + 113726 0.66 0.716656
Target:  5'- -cCGuGGCGcGCgcgcacaaGGUGCGCgGCGAGg -3'
miRNA:   3'- gaGC-CCGCuCGa-------CCACGUGgCGCUCg -5'
21393 5' -60.9 NC_004812.1 + 135805 0.66 0.716656
Target:  5'- -aCGaGGCGGGCgccgacgcgGGcGCGCCGCaGGUg -3'
miRNA:   3'- gaGC-CCGCUCGa--------CCaCGUGGCGcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.