miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21394 3' -53 NC_004812.1 + 67636 0.66 0.984979
Target:  5'- uGGCcaggGACGGCugGGGCcccUGGCCGcCGGc -3'
miRNA:   3'- -CCG----UUGCUGugUCUGa--GCUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 1249 0.66 0.984979
Target:  5'- gGGCGGCGcCGCGG-C-CGcCCGUUGGu -3'
miRNA:   3'- -CCGUUGCuGUGUCuGaGCuGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 53831 0.66 0.984979
Target:  5'- cGGCGACGACgACcacgcggggGGGCUCGacgacGCCGcCGc -3'
miRNA:   3'- -CCGUUGCUG-UG---------UCUGAGC-----UGGCaGCu -5'
21394 3' -53 NC_004812.1 + 32150 0.66 0.984979
Target:  5'- gGGCGGCGcCGCGG-C-CGcCCGUUGGu -3'
miRNA:   3'- -CCGUUGCuGUGUCuGaGCuGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 13794 0.66 0.984979
Target:  5'- cGGCGuuGCGcCGCGGGCaCG-CCGUCa- -3'
miRNA:   3'- -CCGU--UGCuGUGUCUGaGCuGGCAGcu -5'
21394 3' -53 NC_004812.1 + 138048 0.66 0.984979
Target:  5'- cGGCGGCGGCggaGCGGGCcCGcgccgcgcugGCCG-CGAg -3'
miRNA:   3'- -CCGUUGCUG---UGUCUGaGC----------UGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 53644 0.66 0.984979
Target:  5'- -cCGACGACACcGACUaCGACCc-CGAc -3'
miRNA:   3'- ccGUUGCUGUGuCUGA-GCUGGcaGCU- -5'
21394 3' -53 NC_004812.1 + 130113 0.66 0.984979
Target:  5'- -aCGACGACccccGCGGAC-CGAUCGUCc- -3'
miRNA:   3'- ccGUUGCUG----UGUCUGaGCUGGCAGcu -5'
21394 3' -53 NC_004812.1 + 106502 0.66 0.984803
Target:  5'- gGGCGcggguccGCGGCGCgGGGCgccggCGGCCG-CGGc -3'
miRNA:   3'- -CCGU-------UGCUGUG-UCUGa----GCUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 87715 0.66 0.984445
Target:  5'- uGGCGaccgcgagcgggagGCGGCGCGGGCgccggGGCCG-CGGa -3'
miRNA:   3'- -CCGU--------------UGCUGUGUCUGag---CUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 59157 0.66 0.984264
Target:  5'- uGGCGccguccgACgGGCGCAGGCaggccuugaugccgUCG-CCGUCGAc -3'
miRNA:   3'- -CCGU-------UG-CUGUGUCUG--------------AGCuGGCAGCU- -5'
21394 3' -53 NC_004812.1 + 131454 0.66 0.983142
Target:  5'- cGGgGGCGACcgGCGG-CUCcgccCCGUCGAg -3'
miRNA:   3'- -CCgUUGCUG--UGUCuGAGcu--GGCAGCU- -5'
21394 3' -53 NC_004812.1 + 123073 0.66 0.983142
Target:  5'- uGCAgACGGCGCAGGuCUCGcggggcgggGCCGgcgCGGa -3'
miRNA:   3'- cCGU-UGCUGUGUCU-GAGC---------UGGCa--GCU- -5'
21394 3' -53 NC_004812.1 + 36264 0.66 0.983142
Target:  5'- aGGCGGCaGACuCGGGCUCucCCG-CGGc -3'
miRNA:   3'- -CCGUUG-CUGuGUCUGAGcuGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 51101 0.66 0.983142
Target:  5'- cGGCcGC-ACACccACUCGGCCGcCGGg -3'
miRNA:   3'- -CCGuUGcUGUGucUGAGCUGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 67379 0.66 0.983142
Target:  5'- cGUGGCGGCGCGGGCcUCcGCCGcCGc -3'
miRNA:   3'- cCGUUGCUGUGUCUG-AGcUGGCaGCu -5'
21394 3' -53 NC_004812.1 + 3756 0.66 0.983142
Target:  5'- aGCAGCGGCGCGG-CggCG-CCGgCGAc -3'
miRNA:   3'- cCGUUGCUGUGUCuGa-GCuGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 115498 0.66 0.983142
Target:  5'- gGGCGGCGGCcCGGcCUC-ACC-UCGAg -3'
miRNA:   3'- -CCGUUGCUGuGUCuGAGcUGGcAGCU- -5'
21394 3' -53 NC_004812.1 + 5363 0.66 0.983142
Target:  5'- aGGCGGCaGACuCGGGCUCucCCG-CGGc -3'
miRNA:   3'- -CCGUUG-CUGuGUCUGAGcuGGCaGCU- -5'
21394 3' -53 NC_004812.1 + 129264 0.66 0.983142
Target:  5'- aGCAGCGGCGCGG-CggCG-CCGgCGAc -3'
miRNA:   3'- cCGUUGCUGUGUCuGa-GCuGGCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.