miRNA display CGI


Results 21 - 40 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21394 5' -61.1 NC_004812.1 + 95565 0.66 0.767903
Target:  5'- gGGUCGaGCGGgcuaaccgcacggcCGCGcccgcgCgCGGGCGCGg -3'
miRNA:   3'- -CCAGC-CGCCa-------------GCGCua----GgGCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 132993 0.66 0.764338
Target:  5'- --cCGGCGGccgCGCGGacgaCCgGGGCGCc -3'
miRNA:   3'- ccaGCCGCCa--GCGCUa---GGgCCUGCGc -5'
21394 5' -61.1 NC_004812.1 + 156464 0.66 0.764338
Target:  5'- gGGggGGCGcGUUuggGCGGgcUCCCGGGCGgGc -3'
miRNA:   3'- -CCagCCGC-CAG---CGCU--AGGGCCUGCgC- -5'
21394 5' -61.1 NC_004812.1 + 114268 0.66 0.764338
Target:  5'- aGGUaguaGGCcGUCGCGAgcUUCUGGA-GCGg -3'
miRNA:   3'- -CCAg---CCGcCAGCGCU--AGGGCCUgCGC- -5'
21394 5' -61.1 NC_004812.1 + 120895 0.66 0.764338
Target:  5'- cGGagacgCGGgGGUCGCGucUCCCGcauaaaaggcccGGCGCc -3'
miRNA:   3'- -CCa----GCCgCCAGCGCu-AGGGC------------CUGCGc -5'
21394 5' -61.1 NC_004812.1 + 72399 0.66 0.764338
Target:  5'- cGUUuGCGGUCgGCGGUgCCGGuacuuCGCa -3'
miRNA:   3'- cCAGcCGCCAG-CGCUAgGGCCu----GCGc -5'
21394 5' -61.1 NC_004812.1 + 80349 0.66 0.764338
Target:  5'- cGUCgaGGCGGcgcgCGCGggCCUGGcCGCc -3'
miRNA:   3'- cCAG--CCGCCa---GCGCuaGGGCCuGCGc -5'
21394 5' -61.1 NC_004812.1 + 30632 0.66 0.764338
Target:  5'- gGGcCGcGCGGaCGCGGggCgCgGGACGCGc -3'
miRNA:   3'- -CCaGC-CGCCaGCGCUa-G-GgCCUGCGC- -5'
21394 5' -61.1 NC_004812.1 + 7485 0.66 0.764338
Target:  5'- --cCGGCGGccgCGCGGacgaCCgGGGCGCc -3'
miRNA:   3'- ccaGCCGCCa--GCGCUa---GGgCCUGCGc -5'
21394 5' -61.1 NC_004812.1 + 20285 0.66 0.764338
Target:  5'- aGGUCGGgGGUgGgCGGcgCgCCGGcgcaGCGCGc -3'
miRNA:   3'- -CCAGCCgCCAgC-GCUa-G-GGCC----UGCGC- -5'
21394 5' -61.1 NC_004812.1 + 42179 0.66 0.764338
Target:  5'- -uUCGGCGGcgaGCGggCCCuGGGCGa- -3'
miRNA:   3'- ccAGCCGCCag-CGCuaGGG-CCUGCgc -5'
21394 5' -61.1 NC_004812.1 + 84110 0.66 0.764338
Target:  5'- cGG-CGGCGG-CGCGccccccgacCCCGaGGCGCc -3'
miRNA:   3'- -CCaGCCGCCaGCGCua-------GGGC-CUGCGc -5'
21394 5' -61.1 NC_004812.1 + 54 0.66 0.764338
Target:  5'- gGGggGGCGcGUUuggGCGGgcUCCCGGGCGgGc -3'
miRNA:   3'- -CCagCCGC-CAG---CGCU--AGGGCCUGCgC- -5'
21394 5' -61.1 NC_004812.1 + 125563 0.66 0.764338
Target:  5'- gGGggGGCGcGUUuggGCGGgcUCCCGGGCGgGc -3'
miRNA:   3'- -CCagCCGC-CAG---CGCU--AGGGCCUGCgC- -5'
21394 5' -61.1 NC_004812.1 + 32907 0.66 0.764338
Target:  5'- ---aGGUGGaUCaGCGAgCCCGGGCGUc -3'
miRNA:   3'- ccagCCGCC-AG-CGCUaGGGCCUGCGc -5'
21394 5' -61.1 NC_004812.1 + 16853 0.66 0.764338
Target:  5'- aGG-CGcGCGGUCGCGGgggaccgcgaCCUGGucgGCGUGg -3'
miRNA:   3'- -CCaGC-CGCCAGCGCUa---------GGGCC---UGCGC- -5'
21394 5' -61.1 NC_004812.1 + 126202 0.66 0.764338
Target:  5'- cGGccCGGCcuccucGG-CGCGGcagCCCGGGCGCc -3'
miRNA:   3'- -CCa-GCCG------CCaGCGCUa--GGGCCUGCGc -5'
21394 5' -61.1 NC_004812.1 + 67529 0.66 0.764338
Target:  5'- -cUCGGC-GUUGCGcgCCaCGGcGCGCGu -3'
miRNA:   3'- ccAGCCGcCAGCGCuaGG-GCC-UGCGC- -5'
21394 5' -61.1 NC_004812.1 + 97132 0.66 0.764338
Target:  5'- --gCGGCGG-CGCGccucUCCgCGGuCGCGu -3'
miRNA:   3'- ccaGCCGCCaGCGCu---AGG-GCCuGCGC- -5'
21394 5' -61.1 NC_004812.1 + 37477 0.66 0.764338
Target:  5'- cGGUaCGGcCGGUCGUucgccgcGUCgCCGGcGCGCGc -3'
miRNA:   3'- -CCA-GCC-GCCAGCGc------UAG-GGCC-UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.