miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21395 3' -57.6 NC_004812.1 + 57871 0.66 0.852543
Target:  5'- cAGGGcGCGGGCGGgaacgccaucaucuCCUcgcugagguaCUCGUCCUCGa -3'
miRNA:   3'- -UCUCuCGUUCGCU--------------GGG----------GAGCAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 22289 0.66 0.847082
Target:  5'- -cGGAGCGagGGUGACCCUcuggCGggggggCCUCGg -3'
miRNA:   3'- ucUCUCGU--UCGCUGGGGa---GCa-----GGAGC- -5'
21395 3' -57.6 NC_004812.1 + 86572 0.66 0.839119
Target:  5'- aGGucGGCGAGCGcCCCCgccUGUCCgCGg -3'
miRNA:   3'- -UCucUCGUUCGCuGGGGa--GCAGGaGC- -5'
21395 3' -57.6 NC_004812.1 + 136816 0.66 0.839119
Target:  5'- aGGuGGGcCGAGCGGCCCUcuUCGcCC-CGg -3'
miRNA:   3'- -UCuCUC-GUUCGCUGGGG--AGCaGGaGC- -5'
21395 3' -57.6 NC_004812.1 + 91092 0.66 0.839119
Target:  5'- gGGGGGGCGccaggGGCGcgccguCCCCUCGcCCcCGu -3'
miRNA:   3'- -UCUCUCGU-----UCGCu-----GGGGAGCaGGaGC- -5'
21395 3' -57.6 NC_004812.1 + 120146 0.66 0.839119
Target:  5'- -uGGGGCGcGgGGCCCCccCGcUCCUCGa -3'
miRNA:   3'- ucUCUCGUuCgCUGGGGa-GC-AGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 48130 0.66 0.839119
Target:  5'- cGGAgGAGCGGGUGGCC----GUCCUCGa -3'
miRNA:   3'- -UCU-CUCGUUCGCUGGggagCAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 50293 0.66 0.839119
Target:  5'- aGGAGGGCGAGaCG-CCCgacaacaccuuuCUCGUCCa-- -3'
miRNA:   3'- -UCUCUCGUUC-GCuGGG------------GAGCAGGagc -5'
21395 3' -57.6 NC_004812.1 + 69753 0.66 0.838313
Target:  5'- cGGGGGGCAccAGUGcgcucgcGCCUCUCG-CCUCc -3'
miRNA:   3'- -UCUCUCGU--UCGC-------UGGGGAGCaGGAGc -5'
21395 3' -57.6 NC_004812.1 + 131024 0.67 0.830974
Target:  5'- cGGGGA--AGGCGuCCCCgcCGUCCUCc -3'
miRNA:   3'- -UCUCUcgUUCGCuGGGGa-GCAGGAGc -5'
21395 3' -57.6 NC_004812.1 + 47797 0.67 0.830974
Target:  5'- cGGAGGGCGuGCGucGCCCCUCcgGUCaC-CGg -3'
miRNA:   3'- -UCUCUCGUuCGC--UGGGGAG--CAG-GaGC- -5'
21395 3' -57.6 NC_004812.1 + 72481 0.67 0.830974
Target:  5'- aGGGGGGC-GGCGGCgCCUCGgggUCGg -3'
miRNA:   3'- -UCUCUCGuUCGCUGgGGAGCaggAGC- -5'
21395 3' -57.6 NC_004812.1 + 5516 0.67 0.830974
Target:  5'- cGGGGA--AGGCGuCCCCgcCGUCCUCc -3'
miRNA:   3'- -UCUCUcgUUCGCuGGGGa-GCAGGAGc -5'
21395 3' -57.6 NC_004812.1 + 51531 0.67 0.830974
Target:  5'- aGGAcGAGCGcccGGCaGACCCCaggcCGUCC-CGg -3'
miRNA:   3'- -UCU-CUCGU---UCG-CUGGGGa---GCAGGaGC- -5'
21395 3' -57.6 NC_004812.1 + 136473 0.67 0.830974
Target:  5'- cGGGGGCGccaugGGCGACgcgggCCUCGUCUgggCGg -3'
miRNA:   3'- uCUCUCGU-----UCGCUGg----GGAGCAGGa--GC- -5'
21395 3' -57.6 NC_004812.1 + 131029 0.67 0.830974
Target:  5'- cGAG-GCgGGGCGGCgCUUCGUCUUCc -3'
miRNA:   3'- uCUCuCG-UUCGCUGgGGAGCAGGAGc -5'
21395 3' -57.6 NC_004812.1 + 74063 0.67 0.830974
Target:  5'- uGGAGGGCuuccuggccacGGGCGGCgCCUCccggggCCUCGc -3'
miRNA:   3'- -UCUCUCG-----------UUCGCUGgGGAGca----GGAGC- -5'
21395 3' -57.6 NC_004812.1 + 73194 0.67 0.822654
Target:  5'- cGuGGGCGGGCGGggCCgggaCGUCCUCGc -3'
miRNA:   3'- uCuCUCGUUCGCUggGGa---GCAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 82773 0.67 0.822654
Target:  5'- cGGAcGAGCucagGAGCGGCUCCUCGgggUCGa -3'
miRNA:   3'- -UCU-CUCG----UUCGCUGGGGAGCaggAGC- -5'
21395 3' -57.6 NC_004812.1 + 30197 0.67 0.822654
Target:  5'- uGGGGGGCAcAGCucCCCCagCG-CCUCGu -3'
miRNA:   3'- -UCUCUCGU-UCGcuGGGGa-GCaGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.