Results 21 - 40 of 312 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21395 | 5' | -56.4 | NC_004812.1 | + | 90065 | 0.66 | 0.918204 |
Target: 5'- cGGC-AGAGCGGGuGuacCGGcuguUCCGCGAg -3' miRNA: 3'- -CUGcUCUUGCCC-Cua-GCCu---AGGCGCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 130654 | 0.66 | 0.918204 |
Target: 5'- aGGCGGGGAUGGuaGAUCGcGGUCUcgGCGGg -3' miRNA: 3'- -CUGCUCUUGCCc-CUAGC-CUAGG--CGCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 79338 | 0.66 | 0.918204 |
Target: 5'- gGGCGGGGGCGGGcagcgccagCGGcgcccCCGCGAg -3' miRNA: 3'- -CUGCUCUUGCCCcua------GCCua---GGCGCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 10929 | 0.66 | 0.914803 |
Target: 5'- --gGGGGACGaGGGGUCGcGAuaucggcucgugucaUCCGCGc -3' miRNA: 3'- cugCUCUUGC-CCCUAGC-CU---------------AGGCGCu -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 123297 | 0.66 | 0.912489 |
Target: 5'- --gGGGGGCGGGGGggaCGGGUguaggugagUCGCGGg -3' miRNA: 3'- cugCUCUUGCCCCUa--GCCUA---------GGCGCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 50303 | 0.66 | 0.912489 |
Target: 5'- gGGCGAGGACGacggccuGGAU-GGuUCCGCGGu -3' miRNA: 3'- -CUGCUCUUGCc------CCUAgCCuAGGCGCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 135073 | 0.66 | 0.912489 |
Target: 5'- gGACG-GGGCGGGGGcgcgcUCGGAgcCCGUc- -3' miRNA: 3'- -CUGCuCUUGCCCCU-----AGCCUa-GGCGcu -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 154198 | 0.66 | 0.912489 |
Target: 5'- --gGGGGGCGGGGGggaCGGGUguaggugagUCGCGGg -3' miRNA: 3'- cugCUCUUGCCCCUa--GCCUA---------GGCGCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 66368 | 0.66 | 0.912489 |
Target: 5'- -cUGGGAGCGGGGG-CGGGggCGCc- -3' miRNA: 3'- cuGCUCUUGCCCCUaGCCUagGCGcu -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 153160 | 0.66 | 0.912489 |
Target: 5'- nGGCGGGGggccACGGGGAccaCGGGgggCGCGGc -3' miRNA: 3'- -CUGCUCU----UGCCCCUa--GCCUag-GCGCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 104169 | 0.66 | 0.912489 |
Target: 5'- cGACGcGGGCGGGGGgauGGG-CgGCGAu -3' miRNA: 3'- -CUGCuCUUGCCCCUag-CCUaGgCGCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 147354 | 0.66 | 0.912489 |
Target: 5'- -cCGAGAAggaGGGGcGUCGcccuUCCGCGAg -3' miRNA: 3'- cuGCUCUUg--CCCC-UAGCcu--AGGCGCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 122259 | 0.66 | 0.912489 |
Target: 5'- nGGCGGGGggccACGGGGAccaCGGGgggCGCGGc -3' miRNA: 3'- -CUGCUCU----UGCCCCUa--GCCUag-GCGCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 5981 | 0.66 | 0.912489 |
Target: 5'- gGGCGAGucGCGGGGugguaGGcgCCGgGGg -3' miRNA: 3'- -CUGCUCu-UGCCCCuag--CCuaGGCgCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 143623 | 0.66 | 0.911906 |
Target: 5'- cGGCGAGAGCGcgagcgcggccccGGGcgCGGAgCgCGCGu -3' miRNA: 3'- -CUGCUCUUGC-------------CCCuaGCCUaG-GCGCu -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 37367 | 0.66 | 0.906546 |
Target: 5'- cGCGGGccCGGGGAgCGGGccCUGCGGg -3' miRNA: 3'- cUGCUCuuGCCCCUaGCCUa-GGCGCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 26031 | 0.66 | 0.906546 |
Target: 5'- cGGCGAcGGCGGGGc-CGGggCCGgGGg -3' miRNA: 3'- -CUGCUcUUGCCCCuaGCCuaGGCgCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 90498 | 0.66 | 0.906546 |
Target: 5'- uGGCGGGAgggcGCGGGGAggGGGcgUCCGg-- -3' miRNA: 3'- -CUGCUCU----UGCCCCUagCCU--AGGCgcu -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 155245 | 0.66 | 0.906546 |
Target: 5'- cGCGAGGGCGGGccGAggGGGggCGCGGc -3' miRNA: 3'- cUGCUCUUGCCC--CUagCCUagGCGCU- -5' |
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21395 | 5' | -56.4 | NC_004812.1 | + | 151540 | 0.66 | 0.906546 |
Target: 5'- cGGCGAcGGCGGGGc-CGGggCCGgGGg -3' miRNA: 3'- -CUGCUcUUGCCCCuaGCCuaGGCgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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