miRNA display CGI


Results 21 - 40 of 1016 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21396 3' -60.5 NC_004812.1 + 8895 0.66 0.751055
Target:  5'- aUCACGUaCAGCCC--CC-CGCGCCACa -3'
miRNA:   3'- cGGUGCG-GUUGGGcaGGcGUGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 43365 0.66 0.751055
Target:  5'- aGCUcuCGCUGACgCGcUCCGCG-GCCGCg -3'
miRNA:   3'- -CGGu-GCGGUUGgGC-AGGCGUgCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 73824 0.66 0.751055
Target:  5'- cCCACcCCAGCUCGUCCcaGCGgCACc -3'
miRNA:   3'- cGGUGcGGUUGGGCAGGcgUGCgGUG- -5'
21396 3' -60.5 NC_004812.1 + 14748 0.66 0.751055
Target:  5'- -gCAUGCCGAUgCCGUCCaC-CGUCACg -3'
miRNA:   3'- cgGUGCGGUUG-GGCAGGcGuGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 120188 0.66 0.751055
Target:  5'- gGCC-CGCCGugucCCUG-CUGCGCGgCGCc -3'
miRNA:   3'- -CGGuGCGGUu---GGGCaGGCGUGCgGUG- -5'
21396 3' -60.5 NC_004812.1 + 14219 0.66 0.751055
Target:  5'- gGCCcCGCC--CCCGgcggCCacgGCGCGCCGg -3'
miRNA:   3'- -CGGuGCGGuuGGGCa---GG---CGUGCGGUg -5'
21396 3' -60.5 NC_004812.1 + 153054 0.66 0.750124
Target:  5'- uGCC-CGCCGgcgcgcaagaagaGCCgGcCCG-GCGCCGCg -3'
miRNA:   3'- -CGGuGCGGU-------------UGGgCaGGCgUGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 126671 0.66 0.750124
Target:  5'- cGUCgACGCCGucgugcuGCUCGgcuccacCCGCGgGCCGCg -3'
miRNA:   3'- -CGG-UGCGGU-------UGGGCa------GGCGUgCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 8447 0.66 0.750124
Target:  5'- cGCC-CGCCGgagcgcucggcggGCCCGg--GUACGCCAg -3'
miRNA:   3'- -CGGuGCGGU-------------UGGGCaggCGUGCGGUg -5'
21396 3' -60.5 NC_004812.1 + 39348 0.66 0.750124
Target:  5'- cGCC-CGCCGgagcgcucggcggGCCCGg--GUACGCCAg -3'
miRNA:   3'- -CGGuGCGGU-------------UGGGCaggCGUGCGGUg -5'
21396 3' -60.5 NC_004812.1 + 67656 0.66 0.750124
Target:  5'- cCCugGCC-GCCgG-CCGCGCccuccucGCCACc -3'
miRNA:   3'- cGGugCGGuUGGgCaGGCGUG-------CGGUG- -5'
21396 3' -60.5 NC_004812.1 + 27546 0.66 0.750124
Target:  5'- uGCC-CGCCGgcgcgcaagaagaGCCgGcCCG-GCGCCGCg -3'
miRNA:   3'- -CGGuGCGGU-------------UGGgCaGGCgUGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 5228 0.66 0.750124
Target:  5'- aGCCgGCGUCGGCcucgcggCCGUCgggGCGCGCCGa -3'
miRNA:   3'- -CGG-UGCGGUUG-------GGCAGg--CGUGCGGUg -5'
21396 3' -60.5 NC_004812.1 + 104249 0.66 0.74826
Target:  5'- cGgCGCGCCcccagauuucuaacGACCCG-CCgggGCGgGCCGCg -3'
miRNA:   3'- -CgGUGCGG--------------UUGGGCaGG---CGUgCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 86753 0.66 0.74826
Target:  5'- cGCCGgGCCGACCCGgUCGUcgagcaguucugggACGCgGa -3'
miRNA:   3'- -CGGUgCGGUUGGGCaGGCG--------------UGCGgUg -5'
21396 3' -60.5 NC_004812.1 + 99490 0.66 0.745456
Target:  5'- cCCACagacauggcaucgggGCCGACCgCGgCCGCGuCGCCGa -3'
miRNA:   3'- cGGUG---------------CGGUUGG-GCaGGCGU-GCGGUg -5'
21396 3' -60.5 NC_004812.1 + 100362 0.66 0.741704
Target:  5'- gGCCACGguuCCGgcGCCCG-CCGCcggggggcgcgAgGCCACc -3'
miRNA:   3'- -CGGUGC---GGU--UGGGCaGGCG-----------UgCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 115404 0.66 0.741704
Target:  5'- cGUaguCGCCGcCCCGcgCgGCGCGCCGa -3'
miRNA:   3'- -CGgu-GCGGUuGGGCa-GgCGUGCGGUg -5'
21396 3' -60.5 NC_004812.1 + 71253 0.66 0.741704
Target:  5'- gGCgGCgguggGCCGGCUCGgg-GCGCGCCGCc -3'
miRNA:   3'- -CGgUG-----CGGUUGGGCaggCGUGCGGUG- -5'
21396 3' -60.5 NC_004812.1 + 109702 0.66 0.741704
Target:  5'- cGCCGCGgCGGCggCCG-CCGCGC-CCGa -3'
miRNA:   3'- -CGGUGCgGUUG--GGCaGGCGUGcGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.