miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21396 5' -57.4 NC_004812.1 + 96445 0.66 0.859306
Target:  5'- gGGGUG-GAgcUGCAGugGcuGCugggggccgacccGGCCCCCGc -3'
miRNA:   3'- -UCCACaCU--ACGUCugC--UG-------------CUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 19903 0.66 0.852441
Target:  5'- uGGGUGcUGGggGCcGGaaaGGCGACgCCCCGg -3'
miRNA:   3'- -UCCAC-ACUa-CGuCUg--CUGCUG-GGGGC- -5'
21396 5' -57.4 NC_004812.1 + 80282 0.66 0.852441
Target:  5'- cGGUGcggcggGAgaacccccagGCGGACGGCGACCgCgCCGc -3'
miRNA:   3'- uCCACa-----CUa---------CGUCUGCUGCUGG-G-GGC- -5'
21396 5' -57.4 NC_004812.1 + 104624 0.67 0.84463
Target:  5'- ----aUGAUGCGGAUGuuggUGGCCCCCa -3'
miRNA:   3'- uccacACUACGUCUGCu---GCUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 117278 0.67 0.84463
Target:  5'- cGGcG-GgcGgGGGCGGCGGCCUCCGg -3'
miRNA:   3'- uCCaCaCuaCgUCUGCUGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 148179 0.67 0.84463
Target:  5'- cGGcG-GgcGgGGGCGGCGGCCUCCGg -3'
miRNA:   3'- uCCaCaCuaCgUCUGCUGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 84261 0.67 0.836632
Target:  5'- aAGGUGcggGGUGUuauAGGcCGGCGAgUCCCGa -3'
miRNA:   3'- -UCCACa--CUACG---UCU-GCUGCUgGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 11925 0.67 0.836632
Target:  5'- gGGGUcUGccGgAcGACGACGGCCCCgCGa -3'
miRNA:   3'- -UCCAcACuaCgU-CUGCUGCUGGGG-GC- -5'
21396 5' -57.4 NC_004812.1 + 19295 0.67 0.836632
Target:  5'- cGGUGUcGA-GgGGGCGAacgcgGGCCCCCa -3'
miRNA:   3'- uCCACA-CUaCgUCUGCUg----CUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 61843 0.67 0.836632
Target:  5'- cGGGUG-GAcGCGGGCGaacucgGCGGCCagcgCCCGg -3'
miRNA:   3'- -UCCACaCUaCGUCUGC------UGCUGG----GGGC- -5'
21396 5' -57.4 NC_004812.1 + 125991 0.67 0.836632
Target:  5'- gGGGcgcUGUGucaGguGGCGGucccgccgccCGACCCCCGg -3'
miRNA:   3'- -UCC---ACACua-CguCUGCU----------GCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 70890 0.67 0.828456
Target:  5'- uAGGcgcacGUGcgGcCAGugGGCcGCCCCCGc -3'
miRNA:   3'- -UCCa----CACuaC-GUCugCUGcUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 745 0.67 0.828456
Target:  5'- gGGGUG-GggGCGG-CG-CGACCCUCu -3'
miRNA:   3'- -UCCACaCuaCGUCuGCuGCUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 31646 0.67 0.828456
Target:  5'- gGGGUG-GggGCGG-CG-CGACCCUCu -3'
miRNA:   3'- -UCCACaCuaCGUCuGCuGCUGGGGGc -5'
21396 5' -57.4 NC_004812.1 + 114490 0.67 0.828456
Target:  5'- gGGGgaaggGcgGCGGGCGACGGCggaCUCCGg -3'
miRNA:   3'- -UCCaca--CuaCGUCUGCUGCUG---GGGGC- -5'
21396 5' -57.4 NC_004812.1 + 93546 0.67 0.820107
Target:  5'- gGGGgccGUGGggGCGGAgccaGACG-CCCCCGc -3'
miRNA:   3'- -UCCa--CACUa-CGUCUg---CUGCuGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 130944 0.67 0.820107
Target:  5'- cGGUGaUGuucggGCGGACGAacgagcCGGCCgCCCGc -3'
miRNA:   3'- uCCAC-ACua---CGUCUGCU------GCUGG-GGGC- -5'
21396 5' -57.4 NC_004812.1 + 71196 0.67 0.820107
Target:  5'- cGGUagGUGAacgccagGUAGAgGaacGCGGCCCCCGg -3'
miRNA:   3'- uCCA--CACUa------CGUCUgC---UGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 101958 0.67 0.820107
Target:  5'- uGGgcccc-GCGG-CGGCGACCCCCGu -3'
miRNA:   3'- uCCacacuaCGUCuGCUGCUGGGGGC- -5'
21396 5' -57.4 NC_004812.1 + 50211 0.67 0.820107
Target:  5'- cGGGgccGUGAgGCcGAgCGGCGACCCCg- -3'
miRNA:   3'- -UCCa--CACUaCGuCU-GCUGCUGGGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.