miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21397 3' -54.2 NC_004812.1 + 25718 0.66 0.954372
Target:  5'- cGUGGUuguucAUCAGCCACUgGGGCGagAAa -3'
miRNA:   3'- -CGCCG-----UAGUCGGUGGaCCUGUagUUc -5'
21397 3' -54.2 NC_004812.1 + 117393 0.66 0.954372
Target:  5'- cGUGGCccgGGCCACgCUGGugGcCGAGc -3'
miRNA:   3'- -CGCCGuagUCGGUG-GACCugUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 45151 0.66 0.950274
Target:  5'- -aGGCAguUCAccGCCuCCUGGACgAUCAu- -3'
miRNA:   3'- cgCCGU--AGU--CGGuGGACCUG-UAGUuc -5'
21397 3' -54.2 NC_004812.1 + 46911 0.66 0.950274
Target:  5'- cGCGGCggCcGCCGCCgcggcGGACA-CAu- -3'
miRNA:   3'- -CGCCGuaGuCGGUGGa----CCUGUaGUuc -5'
21397 3' -54.2 NC_004812.1 + 100647 0.66 0.950274
Target:  5'- gGCGGCGcgAGCCgcgccgggccggGCCUcGGCGUCGGGc -3'
miRNA:   3'- -CGCCGUagUCGG------------UGGAcCUGUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 101500 0.66 0.950274
Target:  5'- gGCGGUAgaAGaCCGCCgGGuCGUCGGGc -3'
miRNA:   3'- -CGCCGUagUC-GGUGGaCCuGUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 56892 0.66 0.950274
Target:  5'- -gGGCcugugCGGCCAgcCCUGGGCG-CAGGc -3'
miRNA:   3'- cgCCGua---GUCGGU--GGACCUGUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 126606 0.66 0.945938
Target:  5'- aUGGCc-CAGCgCGuCCUGGcCAUCGAGg -3'
miRNA:   3'- cGCCGuaGUCG-GU-GGACCuGUAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 56172 0.66 0.945938
Target:  5'- aUGGCGUaCAGCCcgggcguggugGCCUGGAagaCGUCGu- -3'
miRNA:   3'- cGCCGUA-GUCGG-----------UGGACCU---GUAGUuc -5'
21397 3' -54.2 NC_004812.1 + 563 0.66 0.945938
Target:  5'- cCGGCGcgcgCGGCCGCgUGGAgCcgCGGGc -3'
miRNA:   3'- cGCCGUa---GUCGGUGgACCU-GuaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 95675 0.66 0.945938
Target:  5'- uCGGCGcuguacggCAGCCGCgUGGuCAUUggGu -3'
miRNA:   3'- cGCCGUa-------GUCGGUGgACCuGUAGuuC- -5'
21397 3' -54.2 NC_004812.1 + 45405 0.66 0.945938
Target:  5'- cGCGGUGUCGcCCACCgaagcagGGGCgcgguggccaccGUCAGGu -3'
miRNA:   3'- -CGCCGUAGUcGGUGGa------CCUG------------UAGUUC- -5'
21397 3' -54.2 NC_004812.1 + 5783 0.66 0.945938
Target:  5'- cGCGGgGUCGGCgccCGCCUcGGGCugCGGGg -3'
miRNA:   3'- -CGCCgUAGUCG---GUGGA-CCUGuaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 136164 0.66 0.945938
Target:  5'- cGCcauCGUCGGCCugCUGGACGcgCAc- -3'
miRNA:   3'- -CGcc-GUAGUCGGugGACCUGUa-GUuc -5'
21397 3' -54.2 NC_004812.1 + 31464 0.66 0.945938
Target:  5'- cCGGCGcgcgCGGCCGCgUGGAgCcgCGGGc -3'
miRNA:   3'- cGCCGUa---GUCGGUGgACCU-GuaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 36684 0.66 0.945938
Target:  5'- cGCGGgGUCGGCgccCGCCUcGGGCugCGGGg -3'
miRNA:   3'- -CGCCgUAGUCG---GUGGA-CCUGuaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 63388 0.66 0.945491
Target:  5'- gGCGGCcagGGCCGCCUGGuCGgacuuuuUCAGc -3'
miRNA:   3'- -CGCCGuagUCGGUGGACCuGU-------AGUUc -5'
21397 3' -54.2 NC_004812.1 + 96433 0.66 0.945491
Target:  5'- aUGGcCGUCuuugacgAGCCGCCgacGGACAUCGc- -3'
miRNA:   3'- cGCC-GUAG-------UCGGUGGa--CCUGUAGUuc -5'
21397 3' -54.2 NC_004812.1 + 3656 0.66 0.94136
Target:  5'- cGCGucuGCGUCGGCCAgCaggGGGCG-CAGGc -3'
miRNA:   3'- -CGC---CGUAGUCGGUgGa--CCUGUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 129164 0.66 0.94136
Target:  5'- cGCGucuGCGUCGGCCAgCaggGGGCG-CAGGc -3'
miRNA:   3'- -CGC---CGUAGUCGGUgGa--CCUGUaGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.