miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21397 5' -57.5 NC_004812.1 + 46629 0.66 0.823356
Target:  5'- cGUCCgGGUCgACGC-GGGCGCccgGAaacaGCa -3'
miRNA:   3'- -UAGGaCCAG-UGCGaCCUGCGa--CUg---CG- -5'
21397 5' -57.5 NC_004812.1 + 135971 0.66 0.823356
Target:  5'- cGUCCUcGGgaaaCACGUcGGACGCcgcccccgaGACGCa -3'
miRNA:   3'- -UAGGA-CCa---GUGCGaCCUGCGa--------CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 130713 0.66 0.823356
Target:  5'- -cCCgcg--GCGCUGGGCGCgGGCGCc -3'
miRNA:   3'- uaGGaccagUGCGACCUGCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 75477 0.66 0.823356
Target:  5'- uUUCUGG-CGCGCUGG-CGCcGGCu- -3'
miRNA:   3'- uAGGACCaGUGCGACCuGCGaCUGcg -5'
21397 5' -57.5 NC_004812.1 + 15935 0.66 0.823356
Target:  5'- gGUCgCggGGUCACGCguagacguagGcGGCGCgUGGCGCc -3'
miRNA:   3'- -UAG-Ga-CCAGUGCGa---------C-CUGCG-ACUGCG- -5'
21397 5' -57.5 NC_004812.1 + 17630 0.66 0.821661
Target:  5'- uGUCCUGGUgGuCGUcGGACGCgcccaagacccaGACGUc -3'
miRNA:   3'- -UAGGACCAgU-GCGaCCUGCGa-----------CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 14365 0.67 0.814815
Target:  5'- -gCC-GGcCGCGC-GGGCGCggcGGCGCa -3'
miRNA:   3'- uaGGaCCaGUGCGaCCUGCGa--CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 50352 0.67 0.814815
Target:  5'- -aCCgagGGcCACGCgguaGGGCGCccccGACGCc -3'
miRNA:   3'- uaGGa--CCaGUGCGa---CCUGCGa---CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 74198 0.67 0.814815
Target:  5'- gGUCCaGGU--CGCUGGugGCcucGCGCa -3'
miRNA:   3'- -UAGGaCCAguGCGACCugCGac-UGCG- -5'
21397 5' -57.5 NC_004812.1 + 35531 0.67 0.814815
Target:  5'- cGUCagcaUGG-CGCGCgggGGGCGCgGGCGg -3'
miRNA:   3'- -UAGg---ACCaGUGCGa--CCUGCGaCUGCg -5'
21397 5' -57.5 NC_004812.1 + 113748 0.67 0.814815
Target:  5'- cGUCCUcGUgACGCUGGcGCGCcugccgacGGCGCc -3'
miRNA:   3'- -UAGGAcCAgUGCGACC-UGCGa-------CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 30630 0.67 0.806111
Target:  5'- --aCgGGcCGCGC-GGACGCggGGCGCg -3'
miRNA:   3'- uagGaCCaGUGCGaCCUGCGa-CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 82752 0.67 0.806111
Target:  5'- -cCCUGacCGCGac-GACGCUGACGCg -3'
miRNA:   3'- uaGGACcaGUGCgacCUGCGACUGCG- -5'
21397 5' -57.5 NC_004812.1 + 156138 0.67 0.806111
Target:  5'- --aCgGGcCGCGC-GGACGCggGGCGCg -3'
miRNA:   3'- uagGaCCaGUGCGaCCUGCGa-CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 55996 0.67 0.800813
Target:  5'- gAUCCUGGccggcgcccucguucUCcagcgcACGCUGGGguuCGCcGACGCg -3'
miRNA:   3'- -UAGGACC---------------AG------UGCGACCU---GCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 21127 0.67 0.797251
Target:  5'- -gCCUGGgccugcagcgaCACGUUGGuguCGCcGGCGCg -3'
miRNA:   3'- uaGGACCa----------GUGCGACCu--GCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 136530 0.67 0.797251
Target:  5'- cUCCgagGcGUC-CGCUGGcugGCGCgcgcGACGCg -3'
miRNA:   3'- uAGGa--C-CAGuGCGACC---UGCGa---CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 79230 0.67 0.788244
Target:  5'- -aCCUGGccgcCugGCUGGcguCGCUgggcGACGCc -3'
miRNA:   3'- uaGGACCa---GugCGACCu--GCGA----CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 2000 0.67 0.788244
Target:  5'- gGUCCcgccggcGGUCGCuCgGGGCGCcGACGCc -3'
miRNA:   3'- -UAGGa------CCAGUGcGaCCUGCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 121945 0.67 0.788244
Target:  5'- --gCUGGgggaCGCGCUGGcC-CUGGCGCc -3'
miRNA:   3'- uagGACCa---GUGCGACCuGcGACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.