miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21398 3' -56.5 NC_004812.1 + 23696 0.67 0.82479
Target:  5'- ---gUCCGCUGCGUG-CGcGCCUa--- -3'
miRNA:   3'- uauaAGGCGACGCACuGC-CGGGacug -5'
21398 3' -56.5 NC_004812.1 + 59475 0.67 0.816142
Target:  5'- ---gUCUcCUGCaUGACGGCCCgGGCc -3'
miRNA:   3'- uauaAGGcGACGcACUGCCGGGaCUG- -5'
21398 3' -56.5 NC_004812.1 + 94348 0.67 0.816142
Target:  5'- ---cUCCGCgcGCGgcGCGGCCCcGGCg -3'
miRNA:   3'- uauaAGGCGa-CGCacUGCCGGGaCUG- -5'
21398 3' -56.5 NC_004812.1 + 62023 0.67 0.807324
Target:  5'- ----gCCGCgGCGaGGCGGCCUcgGGCg -3'
miRNA:   3'- uauaaGGCGaCGCaCUGCCGGGa-CUG- -5'
21398 3' -56.5 NC_004812.1 + 109851 0.67 0.807324
Target:  5'- ---cUCCGCUgGCGaGGCGGCagUGGCa -3'
miRNA:   3'- uauaAGGCGA-CGCaCUGCCGggACUG- -5'
21398 3' -56.5 NC_004812.1 + 73947 0.67 0.807324
Target:  5'- ----cCUGCUGCaccagacGugGGCCCUGAUc -3'
miRNA:   3'- uauaaGGCGACGca-----CugCCGGGACUG- -5'
21398 3' -56.5 NC_004812.1 + 94096 0.67 0.807324
Target:  5'- ----cCCGCUcGCGUGcgcccUGGCCCUGGu -3'
miRNA:   3'- uauaaGGCGA-CGCACu----GCCGGGACUg -5'
21398 3' -56.5 NC_004812.1 + 75196 0.67 0.798345
Target:  5'- cGUGUgCCGCgaGCGccucccgcagGGCGGCCgUGACg -3'
miRNA:   3'- -UAUAaGGCGa-CGCa---------CUGCCGGgACUG- -5'
21398 3' -56.5 NC_004812.1 + 33849 0.67 0.798345
Target:  5'- gGUGUUCCGCagcguccGCGUGGCGGUggagGGCa -3'
miRNA:   3'- -UAUAAGGCGa------CGCACUGCCGgga-CUG- -5'
21398 3' -56.5 NC_004812.1 + 118308 0.67 0.798345
Target:  5'- ---aUCCGCUGgGUGGCGGaggggCagaUGACg -3'
miRNA:   3'- uauaAGGCGACgCACUGCCg----Gg--ACUG- -5'
21398 3' -56.5 NC_004812.1 + 74418 0.67 0.798345
Target:  5'- ----cCCGCUcCGggaGACGGUCCUGAUc -3'
miRNA:   3'- uauaaGGCGAcGCa--CUGCCGGGACUG- -5'
21398 3' -56.5 NC_004812.1 + 128173 0.68 0.789213
Target:  5'- -----gCGCUGCGU--CGGCgCCUGGCg -3'
miRNA:   3'- uauaagGCGACGCAcuGCCG-GGACUG- -5'
21398 3' -56.5 NC_004812.1 + 24470 0.68 0.788292
Target:  5'- ----cCCGCUGCaacuccaGUGGCGGCCgCUccugGACg -3'
miRNA:   3'- uauaaGGCGACG-------CACUGCCGG-GA----CUG- -5'
21398 3' -56.5 NC_004812.1 + 1317 0.68 0.779937
Target:  5'- ---gUCCGCggGCGguccgcgGGCGGUCCgcgGGCg -3'
miRNA:   3'- uauaAGGCGa-CGCa------CUGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 32218 0.68 0.779937
Target:  5'- ---gUCCGCggGCGguccgcgGGCGGUCCgcgGGCg -3'
miRNA:   3'- uauaAGGCGa-CGCa------CUGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 80571 0.68 0.770527
Target:  5'- cUGggCCGCcGaCGUGgagGCGGCCCUGGa -3'
miRNA:   3'- uAUaaGGCGaC-GCAC---UGCCGGGACUg -5'
21398 3' -56.5 NC_004812.1 + 64800 0.68 0.770527
Target:  5'- cUGUgCCGCgGCcUGACGGCcgagggCCUGACg -3'
miRNA:   3'- uAUAaGGCGaCGcACUGCCG------GGACUG- -5'
21398 3' -56.5 NC_004812.1 + 111246 0.68 0.770527
Target:  5'- ----aCCGCUGCaucuacgcgGUG-CGGCCCgugGGCg -3'
miRNA:   3'- uauaaGGCGACG---------CACuGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 83356 0.68 0.760991
Target:  5'- -----gCGCUGC-UGGCGGCCCgccugggGGCg -3'
miRNA:   3'- uauaagGCGACGcACUGCCGGGa------CUG- -5'
21398 3' -56.5 NC_004812.1 + 138646 0.69 0.741581
Target:  5'- gGUGUUUCGCggaGCGcUGACGGgCCUGu- -3'
miRNA:   3'- -UAUAAGGCGa--CGC-ACUGCCgGGACug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.