miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21398 5' -64.1 NC_004812.1 + 74228 0.66 0.554056
Target:  5'- ---cCAGG-GGCcccgGGUCuCCGCgCGCCCGc -3'
miRNA:   3'- cacaGUCCaCCG----CCAG-GGCG-GCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 138378 0.66 0.554056
Target:  5'- -cGggCGGG-GGCGcGUa-CGCCGCCCGg -3'
miRNA:   3'- caCa-GUCCaCCGC-CAggGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 103529 0.66 0.554056
Target:  5'- cUG-CAGGUcccuggGGCGGcCCuugagCGCCGCCUGg -3'
miRNA:   3'- cACaGUCCA------CCGCCaGG-----GCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 38376 0.66 0.554056
Target:  5'- -aGgCGGGcGGCGGggCCCGCCgggaGCUCGg -3'
miRNA:   3'- caCaGUCCaCCGCCa-GGGCGG----CGGGC- -5'
21398 5' -64.1 NC_004812.1 + 113165 0.66 0.544629
Target:  5'- ----aGGGUcGGCGGagggCCgCGUCGCCCGa -3'
miRNA:   3'- cacagUCCA-CCGCCa---GG-GCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 145599 0.66 0.544629
Target:  5'- cUGUcCGGGgcgaaGGCGGaCCCGUgGUCCGc -3'
miRNA:   3'- cACA-GUCCa----CCGCCaGGGCGgCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 119781 0.66 0.544629
Target:  5'- uGUGccCGGG-GGCcugccccgGGgucugCCUGCCGCCCGg -3'
miRNA:   3'- -CACa-GUCCaCCG--------CCa----GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 128104 0.66 0.53619
Target:  5'- -gGUCuuAGGUGGCcgcGGagcccccuuuccccgCCCGCCGCCgGg -3'
miRNA:   3'- caCAG--UCCACCG---CCa--------------GGGCGGCGGgC- -5'
21398 5' -64.1 NC_004812.1 + 52317 0.66 0.535255
Target:  5'- -cGUCGGGgugGGCGG-CacuuaaauaCGCgGCCCGc -3'
miRNA:   3'- caCAGUCCa--CCGCCaGg--------GCGgCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 66305 0.66 0.535255
Target:  5'- --cUCGcGGcUGGCGGcgcccaggcgCCCGUCGCCCGc -3'
miRNA:   3'- cacAGU-CC-ACCGCCa---------GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 150683 0.66 0.53432
Target:  5'- uGUGccCGGG-GGCcugcccgGGgucugCCUGCCGCCCGg -3'
miRNA:   3'- -CACa-GUCCaCCG-------CCa----GGGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 65068 0.67 0.525938
Target:  5'- -gGUCuc--GGCGGcCgCCGCCGCCCu -3'
miRNA:   3'- caCAGuccaCCGCCaG-GGCGGCGGGc -5'
21398 5' -64.1 NC_004812.1 + 99134 0.67 0.525938
Target:  5'- -cG-CAGGUGGCcgaagacGUCUCcgacgGCCGCCCGg -3'
miRNA:   3'- caCaGUCCACCGc------CAGGG-----CGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 137778 0.67 0.525938
Target:  5'- ---cCGGGcGGCGcGcaaCCGCCGCCCGc -3'
miRNA:   3'- cacaGUCCaCCGC-Cag-GGCGGCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 82532 0.67 0.525938
Target:  5'- aUG-CGGGccgaGGCGG-CCCGCgcgCGCCCGc -3'
miRNA:   3'- cACaGUCCa---CCGCCaGGGCG---GCGGGC- -5'
21398 5' -64.1 NC_004812.1 + 54640 0.67 0.525938
Target:  5'- -cG-CGGGcGGCGGgcgUCCGCgGCCCc -3'
miRNA:   3'- caCaGUCCaCCGCCa--GGGCGgCGGGc -5'
21398 5' -64.1 NC_004812.1 + 86380 0.67 0.525009
Target:  5'- gGUGggcggaagaGGGUGGCGGcugcgggUCCCGaCCGCgCCu -3'
miRNA:   3'- -CACag-------UCCACCGCC-------AGGGC-GGCG-GGc -5'
21398 5' -64.1 NC_004812.1 + 153093 0.67 0.516682
Target:  5'- -gGUCuGGUgGGCGGgcugUCUgggCGCCGCCCc -3'
miRNA:   3'- caCAGuCCA-CCGCC----AGG---GCGGCGGGc -5'
21398 5' -64.1 NC_004812.1 + 138469 0.67 0.516682
Target:  5'- cUGUC-GG-GGCGGgg-CGCCGCCCu -3'
miRNA:   3'- cACAGuCCaCCGCCaggGCGGCGGGc -5'
21398 5' -64.1 NC_004812.1 + 119267 0.67 0.516682
Target:  5'- -gGUCGucccGGCGGUCCCcCCGCCgGg -3'
miRNA:   3'- caCAGUcca-CCGCCAGGGcGGCGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.