miRNA display CGI


Results 21 - 40 of 834 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21399 5' -64.1 NC_004812.1 + 77588 0.66 0.608147
Target:  5'- cGugGUaCCGGCggucGCGGGCguccCCGGccagcaGCGCCUu -3'
miRNA:   3'- -CugCA-GGCCG----CGCUCG----GGCC------UGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 34747 0.66 0.608147
Target:  5'- -cCGUCCuGGgGCGGcCCCGGG-GCCUc -3'
miRNA:   3'- cuGCAGG-CCgCGCUcGGGCCUgCGGG- -5'
21399 5' -64.1 NC_004812.1 + 123944 0.66 0.608147
Target:  5'- cGGCcUCCucccGCGCGAGCCCa---GCCCg -3'
miRNA:   3'- -CUGcAGGc---CGCGCUCGGGccugCGGG- -5'
21399 5' -64.1 NC_004812.1 + 130574 0.66 0.608147
Target:  5'- gGGCGUCCGGgggccccuggaCGUgGAGCCCcuccGGGCccGCCUg -3'
miRNA:   3'- -CUGCAGGCC-----------GCG-CUCGGG----CCUG--CGGG- -5'
21399 5' -64.1 NC_004812.1 + 145716 0.66 0.608147
Target:  5'- ----aCCGGCGCuga--CGGACGCCCg -3'
miRNA:   3'- cugcaGGCCGCGcucggGCCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 4245 0.66 0.608147
Target:  5'- gGGgGUCuCGaGCGUGguGGCCauGGCGCCCu -3'
miRNA:   3'- -CUgCAG-GC-CGCGC--UCGGgcCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 148360 0.66 0.607193
Target:  5'- cGGCGcCCccgGGgGCGgacccccGGCCCGGcCGCCg -3'
miRNA:   3'- -CUGCaGG---CCgCGC-------UCGGGCCuGCGGg -5'
21399 5' -64.1 NC_004812.1 + 117459 0.66 0.607193
Target:  5'- cGGCGcCCccgGGgGCGgacccccGGCCCGGcCGCCg -3'
miRNA:   3'- -CUGCaGG---CCgCGC-------UCGGGCCuGCGGg -5'
21399 5' -64.1 NC_004812.1 + 55720 0.66 0.607193
Target:  5'- cGCGcUCGGCgcaccccGCGuuCCgGGACGCCCu -3'
miRNA:   3'- cUGCaGGCCG-------CGCucGGgCCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 142743 0.66 0.605284
Target:  5'- cGACGggUCCGu--CGAGCugcugcacuacccgCCGGGCGCCCg -3'
miRNA:   3'- -CUGC--AGGCcgcGCUCG--------------GGCCUGCGGG- -5'
21399 5' -64.1 NC_004812.1 + 84537 0.66 0.598611
Target:  5'- gGGCGUCCaGGcCGCGcuUCCGGAaaccgcgggcaGCCCc -3'
miRNA:   3'- -CUGCAGG-CC-GCGCucGGGCCUg----------CGGG- -5'
21399 5' -64.1 NC_004812.1 + 153140 0.66 0.598611
Target:  5'- cGCGcugaCGGCGCGAccGCCCGccGgGCCCg -3'
miRNA:   3'- cUGCag--GCCGCGCU--CGGGCc-UgCGGG- -5'
21399 5' -64.1 NC_004812.1 + 28543 0.66 0.598611
Target:  5'- aGCGagCGGCcCGAcCUCGGGCGCCg -3'
miRNA:   3'- cUGCagGCCGcGCUcGGGCCUGCGGg -5'
21399 5' -64.1 NC_004812.1 + 14107 0.66 0.598611
Target:  5'- gGGCGaUCCGGgGCGuGCguggCGGGCGaCUCg -3'
miRNA:   3'- -CUGC-AGGCCgCGCuCGg---GCCUGC-GGG- -5'
21399 5' -64.1 NC_004812.1 + 151036 0.66 0.598611
Target:  5'- cGACGggCCGcCGCGAaCgCCGGAC-CCCg -3'
miRNA:   3'- -CUGCa-GGCcGCGCUcG-GGCCUGcGGG- -5'
21399 5' -64.1 NC_004812.1 + 121828 0.66 0.598611
Target:  5'- aGGCGgaggCCGGgcgcuUGCGGGCCgCGG-CGgCCg -3'
miRNA:   3'- -CUGCa---GGCC-----GCGCUCGG-GCCuGCgGG- -5'
21399 5' -64.1 NC_004812.1 + 25528 0.66 0.598611
Target:  5'- cGACGggCCGcCGCGAaCgCCGGAC-CCCg -3'
miRNA:   3'- -CUGCa-GGCcGCGCUcG-GGCCUGcGGG- -5'
21399 5' -64.1 NC_004812.1 + 35698 0.66 0.598611
Target:  5'- gGGCGagggCUGGUGCGGGCgCGGggucggcacGCgGCCCc -3'
miRNA:   3'- -CUGCa---GGCCGCGCUCGgGCC---------UG-CGGG- -5'
21399 5' -64.1 NC_004812.1 + 22581 0.66 0.598611
Target:  5'- ---uUCCGGCucagaguCGGGCUCGGA-GCCCg -3'
miRNA:   3'- cugcAGGCCGc------GCUCGGGCCUgCGGG- -5'
21399 5' -64.1 NC_004812.1 + 107629 0.66 0.598611
Target:  5'- cGGCGcauUuuGGCGCGgugGGCCUcGACgGCCCc -3'
miRNA:   3'- -CUGC---AggCCGCGC---UCGGGcCUG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.