miRNA display CGI


Results 21 - 40 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21400 3' -61.3 NC_004812.1 + 114661 0.66 0.733833
Target:  5'- cGGGCaccaucaagaGCGGGCCGGUgcCGggcgCGcCcggGGCCg -3'
miRNA:   3'- aCUCG----------UGCCCGGCCA--GCa---GCaG---CCGG- -5'
21400 3' -61.3 NC_004812.1 + 141018 0.66 0.733833
Target:  5'- cGAGUcgaagaggagGCGGucGCCGGUCcacagCGgCGGCCa -3'
miRNA:   3'- aCUCG----------UGCC--CGGCCAGca---GCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 128323 0.66 0.733833
Target:  5'- cGGcGCGCGacGGCgGGccCGUCGgcCGGCCa -3'
miRNA:   3'- aCU-CGUGC--CCGgCCa-GCAGCa-GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 94618 0.66 0.733833
Target:  5'- cGcGCACcGGCCGGgCGUUGggacCGGCg -3'
miRNA:   3'- aCuCGUGcCCGGCCaGCAGCa---GCCGg -5'
21400 3' -61.3 NC_004812.1 + 123398 0.66 0.733833
Target:  5'- --uGCACGGcGUCGGggCGgaugaaGUUGGCCu -3'
miRNA:   3'- acuCGUGCC-CGGCCa-GCag----CAGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 148170 0.66 0.733833
Target:  5'- cGAGCgcuccgGCGGGCgGGgg--CGgCGGCCu -3'
miRNA:   3'- aCUCG------UGCCCGgCCagcaGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 105881 0.66 0.733833
Target:  5'- gUGGGCGCGcggugcGCUGGcgcucgCGUCGU-GGCCu -3'
miRNA:   3'- -ACUCGUGCc-----CGGCCa-----GCAGCAgCCGG- -5'
21400 3' -61.3 NC_004812.1 + 118175 0.66 0.733833
Target:  5'- -cGGCcuuaaccaGGaGCCGGUCGaCG-CGGCCa -3'
miRNA:   3'- acUCGug------CC-CGGCCAGCaGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 98599 0.66 0.733833
Target:  5'- -cGGCAUcaucgccgaGGGCgGGgCGUCGgUGGCCa -3'
miRNA:   3'- acUCGUG---------CCCGgCCaGCAGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 2247 0.66 0.733833
Target:  5'- -cGGCGCGGcGgCGGggucCG-CGUCGGCg -3'
miRNA:   3'- acUCGUGCC-CgGCCa---GCaGCAGCCGg -5'
21400 3' -61.3 NC_004812.1 + 127755 0.66 0.733833
Target:  5'- -cGGCGCGGcGgCGGggucCG-CGUCGGCg -3'
miRNA:   3'- acUCGUGCC-CgGCCa---GCaGCAGCCGg -5'
21400 3' -61.3 NC_004812.1 + 2815 0.66 0.733833
Target:  5'- cGGcGCGCGacGGCgGGccCGUCGgcCGGCCa -3'
miRNA:   3'- aCU-CGUGC--CCGgCCa-GCAGCa-GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 114689 0.66 0.724472
Target:  5'- gGGGCggccGCGGGaCCGGaaugcCGUCGaagaGGCCc -3'
miRNA:   3'- aCUCG----UGCCC-GGCCa----GCAGCag--CCGG- -5'
21400 3' -61.3 NC_004812.1 + 2568 0.66 0.724472
Target:  5'- -cGGCAgGGGCaCGGgCGU-GUCgGGCCc -3'
miRNA:   3'- acUCGUgCCCG-GCCaGCAgCAG-CCGG- -5'
21400 3' -61.3 NC_004812.1 + 128076 0.66 0.724472
Target:  5'- -cGGCAgGGGCaCGGgCGU-GUCgGGCCc -3'
miRNA:   3'- acUCGUgCCCG-GCCaGCAgCAG-CCGG- -5'
21400 3' -61.3 NC_004812.1 + 91189 0.66 0.724472
Target:  5'- aGGGaCGCGGGCuCGGgggCGgggggCG-CGGCg -3'
miRNA:   3'- aCUC-GUGCCCG-GCCa--GCa----GCaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 54510 0.66 0.724472
Target:  5'- -cGGCACGGGCa--UCGUCGgauaccugCGGUCc -3'
miRNA:   3'- acUCGUGCCCGgccAGCAGCa-------GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 104055 0.66 0.724472
Target:  5'- gGAGCucgGCGGuGCCGGUCGgacgaCGggggGGCg -3'
miRNA:   3'- aCUCG---UGCC-CGGCCAGCa----GCag--CCGg -5'
21400 3' -61.3 NC_004812.1 + 137598 0.66 0.724472
Target:  5'- gGAGCGCcGGCCuGGugaUCuUCGaggCGGCCg -3'
miRNA:   3'- aCUCGUGcCCGG-CC---AGcAGCa--GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 40199 0.66 0.724472
Target:  5'- aGGGCGCGGGCCcGcagCGga-UCGGCg -3'
miRNA:   3'- aCUCGUGCCCGGcCa--GCagcAGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.