miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21400 5' -56.8 NC_004812.1 + 88526 0.66 0.889383
Target:  5'- cCUGGCCUCCGAgGAgUUCCgggaGC-UGAa -3'
miRNA:   3'- -GACCGGGGGCUaCUaGAGGa---CGuACU- -5'
21400 5' -56.8 NC_004812.1 + 55855 0.66 0.889383
Target:  5'- aCUGcGCCCUCGGucUGGUCcUCUGCAg-- -3'
miRNA:   3'- -GAC-CGGGGGCU--ACUAGaGGACGUacu -5'
21400 5' -56.8 NC_004812.1 + 509 0.66 0.882507
Target:  5'- -cGGCCCCCGGUccccgcuGUCUCCcGCcccggGAg -3'
miRNA:   3'- gaCCGGGGGCUAc------UAGAGGaCGua---CU- -5'
21400 5' -56.8 NC_004812.1 + 147967 0.66 0.882507
Target:  5'- --cGCCCCCGcgGcgCUCCgUGCucAUGGc -3'
miRNA:   3'- gacCGGGGGCuaCuaGAGG-ACG--UACU- -5'
21400 5' -56.8 NC_004812.1 + 126017 0.66 0.882507
Target:  5'- -cGGCCCCCGGUccccgcuGUCUCCcGCcccggGAg -3'
miRNA:   3'- gaCCGGGGGCUAc------UAGAGGaCGua---CU- -5'
21400 5' -56.8 NC_004812.1 + 33634 0.66 0.87541
Target:  5'- aUGGCCCCCGAg---CUCUacgUGUacGUGGa -3'
miRNA:   3'- gACCGGGGGCUacuaGAGG---ACG--UACU- -5'
21400 5' -56.8 NC_004812.1 + 76411 0.66 0.873238
Target:  5'- --cGCCCCCGAccuUGAacccggaggggcggUCUCgUGCAUGc -3'
miRNA:   3'- gacCGGGGGCU---ACU--------------AGAGgACGUACu -5'
21400 5' -56.8 NC_004812.1 + 129891 0.66 0.860571
Target:  5'- -cGGCCCgCCGugcGA-CgcgCCUGCGUGGa -3'
miRNA:   3'- gaCCGGG-GGCua-CUaGa--GGACGUACU- -5'
21400 5' -56.8 NC_004812.1 + 59728 0.66 0.860571
Target:  5'- -gGGCCCCCGGgucgucUGggUUCCgGCcgGGu -3'
miRNA:   3'- gaCCGGGGGCU------ACuaGAGGaCGuaCU- -5'
21400 5' -56.8 NC_004812.1 + 39061 0.66 0.85284
Target:  5'- -gGGCCgCCCGcgGGUgUCggcgUGCGUGAg -3'
miRNA:   3'- gaCCGG-GGGCuaCUAgAGg---ACGUACU- -5'
21400 5' -56.8 NC_004812.1 + 60651 0.67 0.84491
Target:  5'- cCUGGCgCgCGAccgUGAgCUCCUGgAUGAc -3'
miRNA:   3'- -GACCGgGgGCU---ACUaGAGGACgUACU- -5'
21400 5' -56.8 NC_004812.1 + 11944 0.67 0.80252
Target:  5'- -cGGCCCCgCGAgacagGGUgUCCUGCc--- -3'
miRNA:   3'- gaCCGGGG-GCUa----CUAgAGGACGuacu -5'
21400 5' -56.8 NC_004812.1 + 154759 0.68 0.793548
Target:  5'- -aGGCCCCCGgcGggCUCUcaucaGCAUGu -3'
miRNA:   3'- gaCCGGGGGCuaCuaGAGGa----CGUACu -5'
21400 5' -56.8 NC_004812.1 + 123858 0.68 0.793548
Target:  5'- -aGGCCCCCGgcGggCUCUcaucaGCAUGu -3'
miRNA:   3'- gaCCGGGGGCuaCuaGAGGa----CGUACu -5'
21400 5' -56.8 NC_004812.1 + 109110 0.68 0.793548
Target:  5'- gUGGCggcgacguCCCCGGUGAUCUUCUGa---- -3'
miRNA:   3'- gACCG--------GGGGCUACUAGAGGACguacu -5'
21400 5' -56.8 NC_004812.1 + 56543 0.68 0.793548
Target:  5'- -cGGCCCCCGAUcacaCUCCgaGgGUGAc -3'
miRNA:   3'- gaCCGGGGGCUAcua-GAGGa-CgUACU- -5'
21400 5' -56.8 NC_004812.1 + 71853 0.68 0.765798
Target:  5'- -cGGCCgCCCGcacGAUCcCCUGCAgGAg -3'
miRNA:   3'- gaCCGG-GGGCua-CUAGaGGACGUaCU- -5'
21400 5' -56.8 NC_004812.1 + 85636 0.69 0.697332
Target:  5'- -gGGCCCCgCGGUGcUCUCCcggGCAg-- -3'
miRNA:   3'- gaCCGGGG-GCUACuAGAGGa--CGUacu -5'
21400 5' -56.8 NC_004812.1 + 111442 0.7 0.68726
Target:  5'- -cGGCCCCCGGgucaUGAUCgUCCaggagGCgGUGAa -3'
miRNA:   3'- gaCCGGGGGCU----ACUAG-AGGa----CG-UACU- -5'
21400 5' -56.8 NC_004812.1 + 123453 0.7 0.666989
Target:  5'- cCUGGCCCCgGAUGc---CCUGCGggggGAg -3'
miRNA:   3'- -GACCGGGGgCUACuagaGGACGUa---CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.