miRNA display CGI


Results 21 - 40 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 3' -64.1 NC_004812.1 + 48319 0.66 0.587688
Target:  5'- cCGACGCCGc-GgCCGAGGC-CGCa-- -3'
miRNA:   3'- -GCUGCGGCcaCgGGCUCCGcGCGcac -5'
21401 3' -64.1 NC_004812.1 + 136297 0.66 0.587688
Target:  5'- uGGgGgCGGUGCCUGc-GCGCGCGcUGc -3'
miRNA:   3'- gCUgCgGCCACGGGCucCGCGCGC-AC- -5'
21401 3' -64.1 NC_004812.1 + 53561 0.66 0.587688
Target:  5'- cCGACGCa-GUcCCCGAGGUcgacGCGCGa- -3'
miRNA:   3'- -GCUGCGgcCAcGGGCUCCG----CGCGCac -5'
21401 3' -64.1 NC_004812.1 + 137865 0.66 0.587688
Target:  5'- --cUGCCGG-GCCCucaccuucGAuGGCGCGCGg- -3'
miRNA:   3'- gcuGCGGCCaCGGG--------CU-CCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 137368 0.66 0.587688
Target:  5'- uGGgGCCGGaguucgaGCCCcgggGGGGCGC-CGUGg -3'
miRNA:   3'- gCUgCGGCCa------CGGG----CUCCGCGcGCAC- -5'
21401 3' -64.1 NC_004812.1 + 20167 0.66 0.587688
Target:  5'- gCGGCGCuCGG-GCCCcgacccgggcGAGcGgGCGCGUc -3'
miRNA:   3'- -GCUGCG-GCCaCGGG----------CUC-CgCGCGCAc -5'
21401 3' -64.1 NC_004812.1 + 73242 0.66 0.587688
Target:  5'- gGAcCGCCGccGCCCuGGGGCcgGCGCGg- -3'
miRNA:   3'- gCU-GCGGCcaCGGG-CUCCG--CGCGCac -5'
21401 3' -64.1 NC_004812.1 + 48158 0.66 0.578167
Target:  5'- gCGGCGCCGGgcgGCggCCGcGGCGCuggagaacGCGg- -3'
miRNA:   3'- -GCUGCGGCCa--CG--GGCuCCGCG--------CGCac -5'
21401 3' -64.1 NC_004812.1 + 71895 0.66 0.578167
Target:  5'- cCGACGgCGG-GCCgGGcGGCGCgGCGc- -3'
miRNA:   3'- -GCUGCgGCCaCGGgCU-CCGCG-CGCac -5'
21401 3' -64.1 NC_004812.1 + 97561 0.66 0.578167
Target:  5'- ---aGCCGGUGCUgCGccGGCGCGUGaUGg -3'
miRNA:   3'- gcugCGGCCACGG-GCu-CCGCGCGC-AC- -5'
21401 3' -64.1 NC_004812.1 + 13269 0.66 0.578167
Target:  5'- cCGACGUCGGggcGgCgGAGGCcucgGCGCGg- -3'
miRNA:   3'- -GCUGCGGCCa--CgGgCUCCG----CGCGCac -5'
21401 3' -64.1 NC_004812.1 + 21065 0.66 0.578167
Target:  5'- uGugGCCGGgGUCCGAGucCGCgGCGg- -3'
miRNA:   3'- gCugCGGCCaCGGGCUCc-GCG-CGCac -5'
21401 3' -64.1 NC_004812.1 + 16012 0.66 0.578167
Target:  5'- gGGCGCCGGcGCCCauggcggccaGGGucaGCGCGCa-- -3'
miRNA:   3'- gCUGCGGCCaCGGG----------CUC---CGCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 104496 0.66 0.578167
Target:  5'- gCGAUGCCGaucgGCCCGcGGGaCGgGCGg- -3'
miRNA:   3'- -GCUGCGGCca--CGGGC-UCC-GCgCGCac -5'
21401 3' -64.1 NC_004812.1 + 142814 0.66 0.578167
Target:  5'- uGACGgC-GUGCCCGcGGCGCaacgcCGUGg -3'
miRNA:   3'- gCUGCgGcCACGGGCuCCGCGc----GCAC- -5'
21401 3' -64.1 NC_004812.1 + 58756 0.66 0.578167
Target:  5'- gGACccgGCCGGcggcGCCCGgcgagcgaGGGCGCG-GUGg -3'
miRNA:   3'- gCUG---CGGCCa---CGGGC--------UCCGCGCgCAC- -5'
21401 3' -64.1 NC_004812.1 + 155910 0.66 0.576267
Target:  5'- cCGACGCCGacggagcuccgGaCCCGGGGaCGCGCu-- -3'
miRNA:   3'- -GCUGCGGCca---------C-GGGCUCC-GCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 125009 0.66 0.576267
Target:  5'- cCGACGCCGacggagcuccgGaCCCGGGGaCGCGCu-- -3'
miRNA:   3'- -GCUGCGGCca---------C-GGGCUCC-GCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 120319 0.66 0.575317
Target:  5'- gCGACGCCGGucucggcgagccUggacuacuuucgccGCCCcugcaacccgcgGGGGCGCGCGg- -3'
miRNA:   3'- -GCUGCGGCC------------A--------------CGGG------------CUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 1221 0.66 0.574368
Target:  5'- gCGGCGCCGcGggggcuccuccccGCCCGGgcGGCGcCGCGg- -3'
miRNA:   3'- -GCUGCGGC-Ca------------CGGGCU--CCGC-GCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.