miRNA display CGI


Results 21 - 40 of 359 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 5' -56.3 NC_004812.1 + 30859 0.66 0.917336
Target:  5'- gCC-CGgcCAUGgGGGGCcgaGGGGGCg -3'
miRNA:   3'- aGGuGCauGUGCaUCUCGag-CCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 26191 0.66 0.917336
Target:  5'- gCgACGggggcgGCGCGUAGuccgccagcaGGCUCuGGGaGGCg -3'
miRNA:   3'- aGgUGCa-----UGUGCAUC----------UCGAG-CCC-CCG- -5'
21401 5' -56.3 NC_004812.1 + 89678 0.66 0.917336
Target:  5'- cUCCAC-UACuACGUGGAGCa-GGaGGCc -3'
miRNA:   3'- -AGGUGcAUG-UGCAUCUCGagCCcCCG- -5'
21401 5' -56.3 NC_004812.1 + 78016 0.66 0.917336
Target:  5'- -aCAgGcGCGCGUAGAcCUCGGuGGGg -3'
miRNA:   3'- agGUgCaUGUGCAUCUcGAGCC-CCCg -5'
21401 5' -56.3 NC_004812.1 + 12296 0.66 0.917336
Target:  5'- gCCACGUACGCGcuguuGAGg-CGGagguugccGGGCg -3'
miRNA:   3'- aGGUGCAUGUGCau---CUCgaGCC--------CCCG- -5'
21401 5' -56.3 NC_004812.1 + 142385 0.66 0.917336
Target:  5'- cCgGCGcGC-CGUGGccGC-CGGGGGCg -3'
miRNA:   3'- aGgUGCaUGuGCAUCu-CGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 107187 0.66 0.917336
Target:  5'- gUCCACG-ACGCGgcG-GC-CcGGGGCc -3'
miRNA:   3'- -AGGUGCaUGUGCauCuCGaGcCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 105293 0.66 0.917336
Target:  5'- gCCugGccUGgGCGUAGGGCUgccCGuacGGGGCc -3'
miRNA:   3'- aGGugC--AUgUGCAUCUCGA---GC---CCCCG- -5'
21401 5' -56.3 NC_004812.1 + 53416 0.66 0.917336
Target:  5'- cUCCACGaGCGCGUu--GCUgagGaGGGGCu -3'
miRNA:   3'- -AGGUGCaUGUGCAucuCGAg--C-CCCCG- -5'
21401 5' -56.3 NC_004812.1 + 154837 0.66 0.917336
Target:  5'- cUCC-CGUcgGCGCGgGGcgcGGCUgcgaGGGGGCg -3'
miRNA:   3'- -AGGuGCA--UGUGCaUC---UCGAg---CCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 29329 0.66 0.917336
Target:  5'- cUCC-CGUcgGCGCGgGGcgcGGCUgcgaGGGGGCg -3'
miRNA:   3'- -AGGuGCA--UGUGCaUC---UCGAg---CCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 85298 0.66 0.917336
Target:  5'- uUCCAaccgaGUcuCGCGacggGGGGCUCGGuGGCg -3'
miRNA:   3'- -AGGUg----CAu-GUGCa---UCUCGAGCCcCCG- -5'
21401 5' -56.3 NC_004812.1 + 16883 0.66 0.917336
Target:  5'- gCC-CGUcGCGgGUGGAggauucucgGC-CGGGGGCa -3'
miRNA:   3'- aGGuGCA-UGUgCAUCU---------CGaGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 115209 0.66 0.917336
Target:  5'- gCCGCGaGgGCGaGGGGCguucguggcgUUGGGGGUg -3'
miRNA:   3'- aGGUGCaUgUGCaUCUCG----------AGCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 90769 0.66 0.916198
Target:  5'- cUCCACGaGCuCGgugauggucauGGGUUCGGGGaGCc -3'
miRNA:   3'- -AGGUGCaUGuGCau---------CUCGAGCCCC-CG- -5'
21401 5' -56.3 NC_004812.1 + 28473 0.66 0.916198
Target:  5'- gUCCGCGguccaucccgGCGgcGGGCggggaaaGGGGGCu -3'
miRNA:   3'- -AGGUGCaug-------UGCauCUCGag-----CCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 23794 0.66 0.911557
Target:  5'- -aCGCGUGCGCGgcuccauGcGCgccgCGcGGGGCg -3'
miRNA:   3'- agGUGCAUGUGCau-----CuCGa---GC-CCCCG- -5'
21401 5' -56.3 NC_004812.1 + 45143 0.66 0.911557
Target:  5'- gUCCACGggggGCcucacGAGCgagCGGGGGUu -3'
miRNA:   3'- -AGGUGCa---UGugcauCUCGa--GCCCCCG- -5'
21401 5' -56.3 NC_004812.1 + 25067 0.66 0.911557
Target:  5'- gCCGCGcg-GCGgcGGGCUCcucgacGGGGCg -3'
miRNA:   3'- aGGUGCaugUGCauCUCGAGc-----CCCCG- -5'
21401 5' -56.3 NC_004812.1 + 147203 0.66 0.911557
Target:  5'- -gCAUGUGCugGUGGGucuGUagGcGGGGCg -3'
miRNA:   3'- agGUGCAUGugCAUCU---CGagC-CCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.