miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21402 3' -58.2 NC_004812.1 + 138032 0.66 0.816536
Target:  5'- aAAGggGGGGcgaacgcgggcGGGCACCacggcucccggcaacGcGCCGCCa -3'
miRNA:   3'- -UUCuuCCCCau---------CUCGUGG---------------CuCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 36291 0.66 0.815677
Target:  5'- cGGGAGGGGGgucggggucucccagGGAcGCGgCGGGCCggggGCCc -3'
miRNA:   3'- -UUCUUCCCCa--------------UCU-CGUgGCUCGG----CGG- -5'
21402 3' -58.2 NC_004812.1 + 5390 0.66 0.815677
Target:  5'- cGGGAGGGGGgucggggucucccagGGAcGCGgCGGGCCggggGCCc -3'
miRNA:   3'- -UUCUUCCCCa--------------UCU-CGUgGCUCGG----CGG- -5'
21402 3' -58.2 NC_004812.1 + 62045 0.66 0.814815
Target:  5'- -cGGAGGaGGccccGAGCcccgccACCaGGGCCGCCg -3'
miRNA:   3'- uuCUUCC-CCau--CUCG------UGG-CUCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 131647 0.66 0.814815
Target:  5'- gGGGAGGGGGgGGGGguCCccuuuCCGCCc -3'
miRNA:   3'- -UUCUUCCCCaUCUCguGGcuc--GGCGG- -5'
21402 3' -58.2 NC_004812.1 + 51608 0.66 0.814815
Target:  5'- ----cGGGGcgcgaGGGGCGCCGcGGCgGCCc -3'
miRNA:   3'- uucuuCCCCa----UCUCGUGGC-UCGgCGG- -5'
21402 3' -58.2 NC_004812.1 + 78857 0.66 0.814815
Target:  5'- gAGGAGcccGGGG-AGGGCGgaG-GCCGCCc -3'
miRNA:   3'- -UUCUU---CCCCaUCUCGUggCuCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 19891 0.66 0.814815
Target:  5'- cGGggGGGGUcguGGGUGCUggGGGCCGg- -3'
miRNA:   3'- uUCuuCCCCAu--CUCGUGG--CUCGGCgg -5'
21402 3' -58.2 NC_004812.1 + 67147 0.66 0.814815
Target:  5'- -cGGAGGuGGUugauguccGGGCACUGGGUCGUg -3'
miRNA:   3'- uuCUUCC-CCAu-------CUCGUGGCUCGGCGg -5'
21402 3' -58.2 NC_004812.1 + 105955 0.66 0.814815
Target:  5'- -cGucGGGcGgcGAGuCGCCGGGCCccGCCc -3'
miRNA:   3'- uuCuuCCC-CauCUC-GUGGCUCGG--CGG- -5'
21402 3' -58.2 NC_004812.1 + 91496 0.66 0.814815
Target:  5'- -uGAGGGcGGgcuuGGCgGCCGAGCCGgCg -3'
miRNA:   3'- uuCUUCC-CCauc-UCG-UGGCUCGGCgG- -5'
21402 3' -58.2 NC_004812.1 + 113163 0.66 0.814815
Target:  5'- -cGAGGGucGGcGGAGgGCCGcGUCGCCc -3'
miRNA:   3'- uuCUUCC--CCaUCUCgUGGCuCGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 138238 0.66 0.814815
Target:  5'- -cGAuguGGGGcccgcGGGC-CCGGcGCCGCCg -3'
miRNA:   3'- uuCUu--CCCCau---CUCGuGGCU-CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 6138 0.66 0.814815
Target:  5'- gGGGAGGGGGgGGGGguCCccuuuCCGCCc -3'
miRNA:   3'- -UUCUUCCCCaUCUCguGGcuc--GGCGG- -5'
21402 3' -58.2 NC_004812.1 + 43513 0.66 0.812221
Target:  5'- cGAGggGGGcGUGGGuccgccGCGgCGGugucgcggcucgcuGCCGCCg -3'
miRNA:   3'- -UUCuuCCC-CAUCU------CGUgGCU--------------CGGCGG- -5'
21402 3' -58.2 NC_004812.1 + 15922 0.66 0.806111
Target:  5'- cGGGcGGGGGUGGGGuCGCgGGGUcaCGCg -3'
miRNA:   3'- -UUCuUCCCCAUCUC-GUGgCUCG--GCGg -5'
21402 3' -58.2 NC_004812.1 + 32831 0.66 0.806111
Target:  5'- cGAGuGGGGGcggGGGGCgGCCcccaGGGCgGCCa -3'
miRNA:   3'- -UUCuUCCCCa--UCUCG-UGG----CUCGgCGG- -5'
21402 3' -58.2 NC_004812.1 + 93152 0.66 0.806111
Target:  5'- -cGAGGGaGG-AGGGCGCCgccccGAGCacgGCCg -3'
miRNA:   3'- uuCUUCC-CCaUCUCGUGG-----CUCGg--CGG- -5'
21402 3' -58.2 NC_004812.1 + 152885 0.66 0.806111
Target:  5'- uGGGcuGGGccuGAGCGCCGGGCgggacuugggCGCCg -3'
miRNA:   3'- uUCUucCCCau-CUCGUGGCUCG----------GCGG- -5'
21402 3' -58.2 NC_004812.1 + 36526 0.66 0.806111
Target:  5'- gGAGGcggcucGGGGGccGGGC-CCgGGGUCGCCg -3'
miRNA:   3'- -UUCU------UCCCCauCUCGuGG-CUCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.