miRNA display CGI


Results 21 - 40 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21402 5' -63.6 NC_004812.1 + 79417 0.66 0.623652
Target:  5'- cGAGGccgcguucgagcccGGCggCGGGGACgGCG-CCgCCGc -3'
miRNA:   3'- uCUCC--------------UCGa-GCCCCUGgCGCuGG-GGC- -5'
21402 5' -63.6 NC_004812.1 + 25862 0.66 0.620762
Target:  5'- uGAGGGGCcUGGGGuugGcggcggccggcccucCCGCGGCgCCCGc -3'
miRNA:   3'- uCUCCUCGaGCCCC---U---------------GGCGCUG-GGGC- -5'
21402 5' -63.6 NC_004812.1 + 31644 0.66 0.61691
Target:  5'- -cGGGGGU--GGGGGCggCGCGACCCUc -3'
miRNA:   3'- ucUCCUCGagCCCCUG--GCGCUGGGGc -5'
21402 5' -63.6 NC_004812.1 + 115901 0.66 0.61691
Target:  5'- gGGAcGAGauucccCUgGGGGACCGCGGgCUCGu -3'
miRNA:   3'- -UCUcCUC------GAgCCCCUGGCGCUgGGGC- -5'
21402 5' -63.6 NC_004812.1 + 140606 0.66 0.61691
Target:  5'- uGGcGGAGCUgcugcuggCGcGGGGCCGCGgggucggcGCCgCCGg -3'
miRNA:   3'- -UCuCCUCGA--------GC-CCCUGGCGC--------UGG-GGC- -5'
21402 5' -63.6 NC_004812.1 + 99844 0.66 0.61691
Target:  5'- gGGGGGAGgagGGGGACguCGCGGCCUUc -3'
miRNA:   3'- -UCUCCUCgagCCCCUG--GCGCUGGGGc -5'
21402 5' -63.6 NC_004812.1 + 30328 0.66 0.61691
Target:  5'- cGAGGcccAGaa-GGGGcCCGCGGCgCCGg -3'
miRNA:   3'- uCUCC---UCgagCCCCuGGCGCUGgGGC- -5'
21402 5' -63.6 NC_004812.1 + 72604 0.66 0.61691
Target:  5'- aGGAGG-GC-CGGG--CCGCGACgCCCc -3'
miRNA:   3'- -UCUCCuCGaGCCCcuGGCGCUG-GGGc -5'
21402 5' -63.6 NC_004812.1 + 72631 0.66 0.61691
Target:  5'- aGGAGG-GC-CGGG--CCGCGACgCCCc -3'
miRNA:   3'- -UCUCCuCGaGCCCcuGGCGCUG-GGGc -5'
21402 5' -63.6 NC_004812.1 + 109453 0.66 0.61691
Target:  5'- gGGAGaGGGCggcgCGGGGGcgcCCGCgGGCUgCGg -3'
miRNA:   3'- -UCUC-CUCGa---GCCCCU---GGCG-CUGGgGC- -5'
21402 5' -63.6 NC_004812.1 + 123758 0.66 0.61691
Target:  5'- cGGGGugccGCUggccgcccUGGGGGCCGCc-CCCCGc -3'
miRNA:   3'- uCUCCu---CGA--------GCCCCUGGCGcuGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 743 0.66 0.61691
Target:  5'- -cGGGGGU--GGGGGCggCGCGACCCUc -3'
miRNA:   3'- ucUCCUCGagCCCCUG--GCGCUGGGGc -5'
21402 5' -63.6 NC_004812.1 + 26227 0.66 0.61691
Target:  5'- gGGAGGcgGGaCUCGaGGGGCCG-GuCUCCGa -3'
miRNA:   3'- -UCUCC--UC-GAGC-CCCUGGCgCuGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 120886 0.66 0.61691
Target:  5'- gGGGcGGGGCggagacgCGGGGGUCGCGuCuCCCGc -3'
miRNA:   3'- -UCU-CCUCGa------GCCCCUGGCGCuG-GGGC- -5'
21402 5' -63.6 NC_004812.1 + 155836 0.66 0.61691
Target:  5'- cGAGGcccAGaa-GGGGcCCGCGGCgCCGg -3'
miRNA:   3'- uCUCC---UCgagCCCCuGGCGCUGgGGC- -5'
21402 5' -63.6 NC_004812.1 + 138147 0.66 0.61691
Target:  5'- ---cGGGCgCGGGG-CCGCGcCCCCc -3'
miRNA:   3'- ucucCUCGaGCCCCuGGCGCuGGGGc -5'
21402 5' -63.6 NC_004812.1 + 83486 0.66 0.61691
Target:  5'- --cGGGGUcgUCGGGGAgCGCGACggCCa -3'
miRNA:   3'- ucuCCUCG--AGCCCCUgGCGCUGg-GGc -5'
21402 5' -63.6 NC_004812.1 + 114183 0.66 0.61691
Target:  5'- cGGAGGAa---GGGG-CCggacaaGCGGCCCCGg -3'
miRNA:   3'- -UCUCCUcgagCCCCuGG------CGCUGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 95980 0.66 0.615947
Target:  5'- -cAGGGGCUguaccucuggaucCGGGGGCCcgccgaGCGcCCCCu -3'
miRNA:   3'- ucUCCUCGA-------------GCCCCUGG------CGCuGGGGc -5'
21402 5' -63.6 NC_004812.1 + 29225 0.66 0.611136
Target:  5'- uGGGGGGCgggCGGGGgucgcggaggagcggGCCGgGGCUgCGc -3'
miRNA:   3'- uCUCCUCGa--GCCCC---------------UGGCgCUGGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.