miRNA display CGI


Results 21 - 40 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21403 3' -49.1 NC_004812.1 + 147731 0.66 0.998294
Target:  5'- gUACGUGAugACGCgggguCcGCGGGacGCg -3'
miRNA:   3'- gAUGCACUugUGCGau---GaCGUCUa-CG- -5'
21403 3' -49.1 NC_004812.1 + 119409 0.66 0.998294
Target:  5'- --uCGUGGACggccccGCGCUgcugacGCUGCAGGUccucGCg -3'
miRNA:   3'- gauGCACUUG------UGCGA------UGACGUCUA----CG- -5'
21403 3' -49.1 NC_004812.1 + 15965 0.66 0.998094
Target:  5'- -cGCGUGGcgccgccgcgcggcgGCGCGuCUACaGCAccGGUGCa -3'
miRNA:   3'- gaUGCACU---------------UGUGC-GAUGaCGU--CUACG- -5'
21403 3' -49.1 NC_004812.1 + 70073 0.66 0.99795
Target:  5'- -cACGcGAaccACACGCUggaGCUGCAgccGAUGUu -3'
miRNA:   3'- gaUGCaCU---UGUGCGA---UGACGU---CUACG- -5'
21403 3' -49.1 NC_004812.1 + 144510 0.66 0.99795
Target:  5'- cCUGCGcGAgGCGCGCguggGCgacaGCGGaAUGCa -3'
miRNA:   3'- -GAUGCaCU-UGUGCGa---UGa---CGUC-UACG- -5'
21403 3' -49.1 NC_004812.1 + 78689 0.66 0.99795
Target:  5'- -----cGAAC-CGCUGCUGCAGc-GCa -3'
miRNA:   3'- gaugcaCUUGuGCGAUGACGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 109649 0.66 0.99795
Target:  5'- --cCGUc--CGCGCUGCUGCGGAUc- -3'
miRNA:   3'- gauGCAcuuGUGCGAUGACGUCUAcg -5'
21403 3' -49.1 NC_004812.1 + 130998 0.67 0.997593
Target:  5'- aCUGCGUgGGGCGCGCcgACgacgagaaggacgagGCGGGgcgGCg -3'
miRNA:   3'- -GAUGCA-CUUGUGCGa-UGa--------------CGUCUa--CG- -5'
21403 3' -49.1 NC_004812.1 + 21147 0.67 0.99755
Target:  5'- gUugGUGucgccGGCGCGCaGCUcGCGGAggagGCg -3'
miRNA:   3'- gAugCAC-----UUGUGCGaUGA-CGUCUa---CG- -5'
21403 3' -49.1 NC_004812.1 + 50144 0.67 0.99755
Target:  5'- -cGCGUGcGCGCaGCUGgaGCGcGUGCu -3'
miRNA:   3'- gaUGCACuUGUG-CGAUgaCGUcUACG- -5'
21403 3' -49.1 NC_004812.1 + 142150 0.67 0.99755
Target:  5'- aCUGCGUGGugAcCGggGCgacGCGGAUcGCg -3'
miRNA:   3'- -GAUGCACUugU-GCgaUGa--CGUCUA-CG- -5'
21403 3' -49.1 NC_004812.1 + 20097 0.67 0.99755
Target:  5'- cCU-CGgagGAGCGCGCcGCgcGCAGcgGCg -3'
miRNA:   3'- -GAuGCa--CUUGUGCGaUGa-CGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 76067 0.67 0.99755
Target:  5'- -gACGaggaGGAgAUGCUGCUGUAGccGCg -3'
miRNA:   3'- gaUGCa---CUUgUGCGAUGACGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 53608 0.67 0.997088
Target:  5'- aCUACGggucGAGCAUcgagggGCUGCUGgAGcUGCc -3'
miRNA:   3'- -GAUGCa---CUUGUG------CGAUGACgUCuACG- -5'
21403 3' -49.1 NC_004812.1 + 58673 0.67 0.996555
Target:  5'- aCUGCGgguUGGGCugGCUGgaGCccGGggGCu -3'
miRNA:   3'- -GAUGC---ACUUGugCGAUgaCG--UCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 30174 0.67 0.996555
Target:  5'- cCUAgGUGccGCGCGCgGCUGCcugGGggGCa -3'
miRNA:   3'- -GAUgCACu-UGUGCGaUGACG---UCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 58023 0.67 0.996555
Target:  5'- -gGCGaUGAugccGCGCaGCUGCUcGCAGA-GCg -3'
miRNA:   3'- gaUGC-ACU----UGUG-CGAUGA-CGUCUaCG- -5'
21403 3' -49.1 NC_004812.1 + 24851 0.67 0.996555
Target:  5'- -cGCGccgcGGGCgGCGCgGCUGCGGggGCg -3'
miRNA:   3'- gaUGCa---CUUG-UGCGaUGACGUCuaCG- -5'
21403 3' -49.1 NC_004812.1 + 133967 0.67 0.996555
Target:  5'- -cACGUcGAGCGuguCGCUcGC-GCGGAUGCu -3'
miRNA:   3'- gaUGCA-CUUGU---GCGA-UGaCGUCUACG- -5'
21403 3' -49.1 NC_004812.1 + 47574 0.67 0.996198
Target:  5'- gUACGUGAugaacucgcgauccgACACGCgcagGCAGccGCg -3'
miRNA:   3'- gAUGCACU---------------UGUGCGaugaCGUCuaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.