miRNA display CGI


Results 21 - 40 of 500 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21403 5' -61.6 NC_004812.1 + 105737 0.66 0.700759
Target:  5'- cCGGGGGGUGGCccgcgaccaGCugguuauagugggcGGCgggGAUCCACa- -3'
miRNA:   3'- -GCCCUCCGCCG---------CG--------------UCGa--CUAGGUGgg -5'
21403 5' -61.6 NC_004812.1 + 79186 0.66 0.697868
Target:  5'- gCGGGAGcUGGUGCAGCgcgggcgagaccugGAggCC-CCCg -3'
miRNA:   3'- -GCCCUCcGCCGCGUCGa-------------CUa-GGuGGG- -5'
21403 5' -61.6 NC_004812.1 + 39856 0.66 0.697868
Target:  5'- gCGGGGGGCcgggggcuccgccauGGCGCG--UGGUCC-UCCg -3'
miRNA:   3'- -GCCCUCCG---------------CCGCGUcgACUAGGuGGG- -5'
21403 5' -61.6 NC_004812.1 + 110964 0.66 0.697868
Target:  5'- gCGGGAcucgcuaucgccgcgGGCaGCGCGGCc-GUCCccgcGCCCa -3'
miRNA:   3'- -GCCCU---------------CCGcCGCGUCGacUAGG----UGGG- -5'
21403 5' -61.6 NC_004812.1 + 29972 0.66 0.694005
Target:  5'- gGGGAgccuGGCGGC-CGGCU--UCUGCCUc -3'
miRNA:   3'- gCCCU----CCGCCGcGUCGAcuAGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 116131 0.66 0.694005
Target:  5'- gCGGcGAuGGCGGUGUauuacgGGgaGAcgggCCGCCCg -3'
miRNA:   3'- -GCC-CU-CCGCCGCG------UCgaCUa---GGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 150386 0.66 0.694005
Target:  5'- gCGGGGccgcGGCGGCagggGCGGCguccgcGggCCGCCg -3'
miRNA:   3'- -GCCCU----CCGCCG----CGUCGa-----CuaGGUGGg -5'
21403 5' -61.6 NC_004812.1 + 52273 0.66 0.694005
Target:  5'- gGGGAGGCgggggaugGGCGgAGaaGGUCacgggGCCCg -3'
miRNA:   3'- gCCCUCCG--------CCGCgUCgaCUAGg----UGGG- -5'
21403 5' -61.6 NC_004812.1 + 119485 0.66 0.694005
Target:  5'- gCGGGGccgcGGCGGCagggGCGGCguccgcGggCCGCCg -3'
miRNA:   3'- -GCCCU----CCGCCG----CGUCGa-----CuaGGUGGg -5'
21403 5' -61.6 NC_004812.1 + 38820 0.66 0.694005
Target:  5'- uCGGGGGcuGCGGCGCGcGCcgGcgCgGCCg -3'
miRNA:   3'- -GCCCUC--CGCCGCGU-CGa-CuaGgUGGg -5'
21403 5' -61.6 NC_004812.1 + 7919 0.66 0.694005
Target:  5'- uCGGGGGcuGCGGCGCGcGCcgGcgCgGCCg -3'
miRNA:   3'- -GCCCUC--CGCCGCGU-CGa-CuaGgUGGg -5'
21403 5' -61.6 NC_004812.1 + 72157 0.66 0.694005
Target:  5'- gGGGAGGCgGGCuuggggggagGguGCUGGgugCgGCCg -3'
miRNA:   3'- gCCCUCCG-CCG----------CguCGACUa--GgUGGg -5'
21403 5' -61.6 NC_004812.1 + 154505 0.66 0.694005
Target:  5'- uGGGAcuGG-GaGCGCGGCccGggCCGCCCc -3'
miRNA:   3'- gCCCU--CCgC-CGCGUCGa-CuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 155481 0.66 0.694005
Target:  5'- gGGGAgccuGGCGGC-CGGCU--UCUGCCUc -3'
miRNA:   3'- gCCCU----CCGCCGcGUCGAcuAGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 28996 0.66 0.694005
Target:  5'- uGGGAcuGG-GaGCGCGGCccGggCCGCCCc -3'
miRNA:   3'- gCCCU--CCgC-CGCGUCGa-CuaGGUGGG- -5'
21403 5' -61.6 NC_004812.1 + 134088 0.66 0.694005
Target:  5'- gCGGGGGcgccgacgucGCGGUGCGugacGgUGGUCCGCgCg -3'
miRNA:   3'- -GCCCUC----------CGCCGCGU----CgACUAGGUGgG- -5'
21403 5' -61.6 NC_004812.1 + 74687 0.66 0.694005
Target:  5'- cCGGGAGccGCGG-GUAGUgcgcGUCCGCCa -3'
miRNA:   3'- -GCCCUC--CGCCgCGUCGac--UAGGUGGg -5'
21403 5' -61.6 NC_004812.1 + 54796 0.66 0.694005
Target:  5'- gCGGG-GGCGcCGCGGU---UCCugCCg -3'
miRNA:   3'- -GCCCuCCGCcGCGUCGacuAGGugGG- -5'
21403 5' -61.6 NC_004812.1 + 126741 0.66 0.688198
Target:  5'- cCGGGGuccuGGCGGacggcuugucUGCGGCUGAcugcgacgggcagauUCCgGCCCc -3'
miRNA:   3'- -GCCCU----CCGCC----------GCGUCGACU---------------AGG-UGGG- -5'
21403 5' -61.6 NC_004812.1 + 131647 0.66 0.684317
Target:  5'- gGGGAGGgGGgGgGGgUccccuuUCCGCCCu -3'
miRNA:   3'- gCCCUCCgCCgCgUCgAcu----AGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.