miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21404 3' -53.1 NC_004812.1 + 12372 0.69 0.88778
Target:  5'- -aGCGCGUgaucgUCAUGGCGAGCa------ -3'
miRNA:   3'- caUGCGCG-----AGUACCGCUCGaugaagu -5'
21404 3' -53.1 NC_004812.1 + 131390 0.69 0.88778
Target:  5'- -gAgGCGCUCGUGaGCGAGC-ACgcgUCc -3'
miRNA:   3'- caUgCGCGAGUAC-CGCUCGaUGa--AGu -5'
21404 3' -53.1 NC_004812.1 + 59228 0.69 0.877705
Target:  5'- -cGCGCGCcCAcgcccgcgaccgcGGCGAGCUGCUUg- -3'
miRNA:   3'- caUGCGCGaGUa------------CCGCUCGAUGAAgu -5'
21404 3' -53.1 NC_004812.1 + 87346 0.69 0.873246
Target:  5'- aUGCG-GCUCAUGgagcGCGGGCUGCagUCGg -3'
miRNA:   3'- cAUGCgCGAGUAC----CGCUCGAUGa-AGU- -5'
21404 3' -53.1 NC_004812.1 + 145410 0.69 0.873246
Target:  5'- -cGCGCGCgggCGUGGCGGGCc------ -3'
miRNA:   3'- caUGCGCGa--GUACCGCUCGaugaagu -5'
21404 3' -53.1 NC_004812.1 + 77461 0.7 0.857797
Target:  5'- -gGgGgGCUCGUGGCGAGCggagGCg--- -3'
miRNA:   3'- caUgCgCGAGUACCGCUCGa---UGaagu -5'
21404 3' -53.1 NC_004812.1 + 56131 0.7 0.841483
Target:  5'- cUGCGCGCUCcgGGCG-GCcGCg--- -3'
miRNA:   3'- cAUGCGCGAGuaCCGCuCGaUGaagu -5'
21404 3' -53.1 NC_004812.1 + 110275 0.72 0.739216
Target:  5'- -gGCG-GCUCGUGGCGGGCggACUggCGg -3'
miRNA:   3'- caUGCgCGAGUACCGCUCGa-UGAa-GU- -5'
21404 3' -53.1 NC_004812.1 + 131296 0.73 0.708695
Target:  5'- -gACGCGCUCGccGGUGAGCUuccgggcCUUCGu -3'
miRNA:   3'- caUGCGCGAGUa-CCGCUCGAu------GAAGU- -5'
21404 3' -53.1 NC_004812.1 + 85357 0.73 0.69837
Target:  5'- cGUGCGCGUUCAucgaccUGGacgcCGAGCUguGCUUCGg -3'
miRNA:   3'- -CAUGCGCGAGU------ACC----GCUCGA--UGAAGU- -5'
21404 3' -53.1 NC_004812.1 + 140099 0.73 0.667082
Target:  5'- -aGCGCGCcCAUGGCGGGC-GCgcgCAg -3'
miRNA:   3'- caUGCGCGaGUACCGCUCGaUGaa-GU- -5'
21404 3' -53.1 NC_004812.1 + 88297 0.75 0.572546
Target:  5'- -gAgGCGCUCugcGGCGAGCUGCUg-- -3'
miRNA:   3'- caUgCGCGAGua-CCGCUCGAUGAagu -5'
21404 3' -53.1 NC_004812.1 + 116191 0.75 0.551831
Target:  5'- ---aGCGC-CGUGGCGGGCUACUa-- -3'
miRNA:   3'- caugCGCGaGUACCGCUCGAUGAagu -5'
21404 3' -53.1 NC_004812.1 + 108724 0.76 0.52121
Target:  5'- --uCGUGCUCGUGGCGcGCUACUa-- -3'
miRNA:   3'- cauGCGCGAGUACCGCuCGAUGAagu -5'
21404 3' -53.1 NC_004812.1 + 119816 1.09 0.004615
Target:  5'- cGUACGCGCUCAUGGCGAGCUACUUCAa -3'
miRNA:   3'- -CAUGCGCGAGUACCGCUCGAUGAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.