Results 21 - 40 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21404 | 5' | -59.1 | NC_004812.1 | + | 109347 | 0.66 | 0.801486 |
Target: 5'- aCCGgGGCGCcGUagacucgGCCACCGGgaUGCu -3' miRNA: 3'- gGGCaCCGCGaCA-------UGGUGGUCg-ACGc -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 24906 | 0.66 | 0.799743 |
Target: 5'- cCUCGUcgagGGUGCgGUGCCuuccgaugaaggucACCAGgUGCGg -3' miRNA: 3'- -GGGCA----CCGCGaCAUGG--------------UGGUCgACGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 50072 | 0.66 | 0.797116 |
Target: 5'- cCCCGgcguacgugacgaaGGCGCcGcgGCCGCCGGCgccccGCGc -3' miRNA: 3'- -GGGCa-------------CCGCGaCa-UGGUGGUCGa----CGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 148407 | 0.66 | 0.793595 |
Target: 5'- uUCGUgucuGGCGC-GUGCCugCGGggGCGg -3' miRNA: 3'- gGGCA----CCGCGaCAUGGugGUCgaCGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 46441 | 0.66 | 0.793595 |
Target: 5'- cCCUG-GGCGCUGgcGCUggGCCAGgcgcuCUGCGu -3' miRNA: 3'- -GGGCaCCGCGACa-UGG--UGGUC-----GACGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 3841 | 0.66 | 0.793595 |
Target: 5'- cCCCGcgcaGGCGCaUG-AgCACCAGC-GCGu -3' miRNA: 3'- -GGGCa---CCGCG-ACaUgGUGGUCGaCGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 27168 | 0.66 | 0.793595 |
Target: 5'- gCCGcGcGCGCcGUGCCGCC-GCcGCGc -3' miRNA: 3'- gGGCaC-CGCGaCAUGGUGGuCGaCGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 143976 | 0.66 | 0.793595 |
Target: 5'- gUCgGUGGCGCUGcagACCGaCAGCUacacGCu -3' miRNA: 3'- -GGgCACCGCGACa--UGGUgGUCGA----CGc -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 128018 | 0.66 | 0.793595 |
Target: 5'- cCUCGaagaacaGGCGCacGUcguCCGCCAGCUGCc -3' miRNA: 3'- -GGGCa------CCGCGa-CAu--GGUGGUCGACGc -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 50045 | 0.66 | 0.793595 |
Target: 5'- cCCCcUGGCGauuaacgUGgACCACCGcgcccGCUGCGa -3' miRNA: 3'- -GGGcACCGCg------ACaUGGUGGU-----CGACGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 94365 | 0.66 | 0.793595 |
Target: 5'- cCCCG-GcGCGCUGguuUGCC-CUGGCgGCGg -3' miRNA: 3'- -GGGCaC-CGCGAC---AUGGuGGUCGaCGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 130507 | 0.66 | 0.793595 |
Target: 5'- uCCCGgacGCGCUGccgccCCACguGCUGgCGg -3' miRNA: 3'- -GGGCac-CGCGACau---GGUGguCGAC-GC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 129349 | 0.66 | 0.793595 |
Target: 5'- cCCCGcgcaGGCGCaUG-AgCACCAGC-GCGu -3' miRNA: 3'- -GGGCa---CCGCG-ACaUgGUGGUCGaCGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 49300 | 0.66 | 0.792711 |
Target: 5'- cCUCGaGGCGCUGUG-CGCCAacuacguaggcccGCUGUa -3' miRNA: 3'- -GGGCaCCGCGACAUgGUGGU-------------CGACGc -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 138065 | 0.66 | 0.784695 |
Target: 5'- gCCCGcgccGCGCUG-GCCGCgAGC-GCGa -3' miRNA: 3'- -GGGCac--CGCGACaUGGUGgUCGaCGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 150254 | 0.66 | 0.784695 |
Target: 5'- cCCUGgcgggcGGCGCgccUGCCGCCcccuGCUGCc -3' miRNA: 3'- -GGGCa-----CCGCGac-AUGGUGGu---CGACGc -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 72248 | 0.66 | 0.784695 |
Target: 5'- gUCCGgucggcgGGCGCgagacuggACCGCCGGCU-CGg -3' miRNA: 3'- -GGGCa------CCGCGaca-----UGGUGGUCGAcGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 147516 | 0.66 | 0.784695 |
Target: 5'- cCCCGaGGCGCcGUcuucgcGCCGCCgccuggacgGGCgGCGg -3' miRNA: 3'- -GGGCaCCGCGaCA------UGGUGG---------UCGaCGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 79634 | 0.66 | 0.784695 |
Target: 5'- gCCGUGGCcgGCg--GCC-CCGGCccgGCGg -3' miRNA: 3'- gGGCACCG--CGacaUGGuGGUCGa--CGC- -5' |
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21404 | 5' | -59.1 | NC_004812.1 | + | 76623 | 0.66 | 0.784695 |
Target: 5'- aCCCGUccGGaCGCg--GCCugC-GCUGCGu -3' miRNA: 3'- -GGGCA--CC-GCGacaUGGugGuCGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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