miRNA display CGI


Results 21 - 40 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21405 3' -55.7 NC_004812.1 + 19013 0.66 0.915662
Target:  5'- --cGCGGcCGCggGCC-GGcGCAgcGCGGGCg -3'
miRNA:   3'- guaCGUC-GCGa-UGGaCC-UGU--UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 103042 0.66 0.915662
Target:  5'- -cUGUcGCGCgucgACCUcggGGACugcguCGGGCg -3'
miRNA:   3'- guACGuCGCGa---UGGA---CCUGuu---GCCCG- -5'
21405 3' -55.7 NC_004812.1 + 23514 0.66 0.915662
Target:  5'- aCGUGCgGGUGCUGCUgGGGCcccACGucGGCg -3'
miRNA:   3'- -GUACG-UCGCGAUGGaCCUGu--UGC--CCG- -5'
21405 3' -55.7 NC_004812.1 + 46459 0.66 0.915662
Target:  5'- --gGCcaGGCGCUcuGCgUGGACGGCcucagggaGGGCc -3'
miRNA:   3'- guaCG--UCGCGA--UGgACCUGUUG--------CCCG- -5'
21405 3' -55.7 NC_004812.1 + 62146 0.66 0.915662
Target:  5'- aUcgGCGGCGCgggcgGCCUccGGGuuCuuCGGGCc -3'
miRNA:   3'- -GuaCGUCGCGa----UGGA--CCU--GuuGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 76173 0.66 0.915662
Target:  5'- -uUGCGG-GCgGCUggggUGGGCGGCGGGg -3'
miRNA:   3'- guACGUCgCGaUGG----ACCUGUUGCCCg -5'
21405 3' -55.7 NC_004812.1 + 44350 0.66 0.915662
Target:  5'- --aGCGGCGCgc---GGGCAAaGGGCg -3'
miRNA:   3'- guaCGUCGCGauggaCCUGUUgCCCG- -5'
21405 3' -55.7 NC_004812.1 + 147565 0.66 0.915662
Target:  5'- gGUGcCGGCGCgGCCgcguacGGCAuggcuCGGGCg -3'
miRNA:   3'- gUAC-GUCGCGaUGGac----CUGUu----GCCCG- -5'
21405 3' -55.7 NC_004812.1 + 45196 0.66 0.915662
Target:  5'- cCcgGCGGCGCgGCC-GG-CAGCGagacGGCg -3'
miRNA:   3'- -GuaCGUCGCGaUGGaCCuGUUGC----CCG- -5'
21405 3' -55.7 NC_004812.1 + 108572 0.66 0.915662
Target:  5'- --gGUGGCGCgcgccccGCUcGGGCAGCGcGGCc -3'
miRNA:   3'- guaCGUCGCGa------UGGaCCUGUUGC-CCG- -5'
21405 3' -55.7 NC_004812.1 + 107736 0.66 0.915662
Target:  5'- gGUGC-GCGCcaggGCCcGGGCcuuGACGaGGCg -3'
miRNA:   3'- gUACGuCGCGa---UGGaCCUG---UUGC-CCG- -5'
21405 3' -55.7 NC_004812.1 + 54774 0.66 0.915077
Target:  5'- --gGCGGCGCU-CgUGGcCGACcuagcggGGGCg -3'
miRNA:   3'- guaCGUCGCGAuGgACCuGUUG-------CCCG- -5'
21405 3' -55.7 NC_004812.1 + 115508 0.66 0.915077
Target:  5'- uGUGUAGUGUUaauagcccccgggACCUGGGCGguucuAUGGGa -3'
miRNA:   3'- gUACGUCGCGA-------------UGGACCUGU-----UGCCCg -5'
21405 3' -55.7 NC_004812.1 + 152096 0.66 0.915077
Target:  5'- --aGCAGCGCgcCCUGGucgaACAGCaugccgcccaccgGGGUc -3'
miRNA:   3'- guaCGUCGCGauGGACC----UGUUG-------------CCCG- -5'
21405 3' -55.7 NC_004812.1 + 121195 0.66 0.915077
Target:  5'- --aGCAGCGCgcCCUGGucgaACAGCaugccgcccaccgGGGUc -3'
miRNA:   3'- guaCGUCGCGauGGACC----UGUUG-------------CCCG- -5'
21405 3' -55.7 NC_004812.1 + 122770 0.66 0.91449
Target:  5'- --cGguGCGCccgccgagggugACCgaGGACGggGCGGGCu -3'
miRNA:   3'- guaCguCGCGa-----------UGGa-CCUGU--UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 34911 0.66 0.912116
Target:  5'- --cGCGGCGUUcaggaucagcgccgcACCUcGGCGuucACGGGCu -3'
miRNA:   3'- guaCGUCGCGA---------------UGGAcCUGU---UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 30532 0.66 0.909705
Target:  5'- --gGCcGCGCcGCg-GGACGgGCGGGCg -3'
miRNA:   3'- guaCGuCGCGaUGgaCCUGU-UGCCCG- -5'
21405 3' -55.7 NC_004812.1 + 141684 0.66 0.909705
Target:  5'- uCAUGCAcGCGCccGCCUucGaGACcGCGGGg -3'
miRNA:   3'- -GUACGU-CGCGa-UGGA--C-CUGuUGCCCg -5'
21405 3' -55.7 NC_004812.1 + 156453 0.66 0.909705
Target:  5'- --cGCGGCGg-GCCgcgGGcGCGGCGGcGCg -3'
miRNA:   3'- guaCGUCGCgaUGGa--CC-UGUUGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.